• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

长链非编码RNA与相关疾病的生物信息学分析:综述

Bioinformatics Analysis of Long Non-coding RNA and Related Diseases: An Overview.

作者信息

Gong Yuxin, Zhu Wen, Sun Meili, Shi Lei

机构信息

School of Mathematics and Statistics, Hainan Normal University, Haikou, China.

Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, China.

出版信息

Front Genet. 2021 Dec 8;12:813873. doi: 10.3389/fgene.2021.813873. eCollection 2021.

DOI:10.3389/fgene.2021.813873
PMID:34956340
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8692768/
Abstract

Long non-coding RNAs (lncRNAs) are usually located in the nucleus and cytoplasm of cells. The transcripts of lncRNAs are >200 nucleotides in length and do not encode proteins. Compared with small RNAs, lncRNAs have longer sequences, more complex spatial structures, and more diverse and complex mechanisms involved in the regulation of gene expression. LncRNAs are widely involved in the biological processes of cells, and in the occurrence and development of many human diseases. Many studies have shown that lncRNAs can induce the occurrence of diseases, and some lncRNAs undergo specific changes in tumor cells. Research into the roles of lncRNAs has covered the diagnosis of, for example, cardiovascular, cerebrovascular, and central nervous system diseases. The bioinformatics of lncRNAs has gradually become a research hotspot and has led to the discovery of a large number of lncRNAs and associated biological functions, and lncRNA databases and recognition models have been developed. In this review, the research progress of lncRNAs is discussed, and lncRNA-related databases and the mechanisms and modes of action of lncRNAs are described. In addition, disease-related lncRNA methods and the relationships between lncRNAs and human lung adenocarcinoma, rectal cancer, colon cancer, heart disease, and diabetes are discussed. Finally, the significance and existing problems of lncRNA research are considered.

摘要

长链非编码RNA(lncRNAs)通常位于细胞的细胞核和细胞质中。lncRNAs的转录本长度大于200个核苷酸,且不编码蛋白质。与小RNA相比,lncRNAs具有更长的序列、更复杂的空间结构以及参与基因表达调控的更多样化和复杂的机制。LncRNAs广泛参与细胞的生物学过程以及许多人类疾病的发生和发展。许多研究表明,lncRNAs可诱导疾病的发生,并且一些lncRNAs在肿瘤细胞中会发生特异性变化。对lncRNAs作用的研究已涵盖例如心血管、脑血管和中枢神经系统疾病的诊断。LncRNAs的生物信息学已逐渐成为一个研究热点,并导致发现了大量的lncRNAs及其相关生物学功能,同时还开发了lncRNA数据库和识别模型。在本综述中,讨论了lncRNAs的研究进展,并描述了与lncRNA相关的数据库以及lncRNAs的作用机制和模式。此外,还讨论了与疾病相关的lncRNA方法以及lncRNAs与人类肺腺癌、直肠癌、结肠癌、心脏病和糖尿病之间的关系。最后,对lncRNA研究的意义和存在的问题进行了探讨。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0184/8692768/3fbbe7418c86/fgene-12-813873-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0184/8692768/2a5eb94bcbc7/fgene-12-813873-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0184/8692768/3fbbe7418c86/fgene-12-813873-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0184/8692768/2a5eb94bcbc7/fgene-12-813873-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0184/8692768/3fbbe7418c86/fgene-12-813873-g002.jpg

相似文献

1
Bioinformatics Analysis of Long Non-coding RNA and Related Diseases: An Overview.长链非编码RNA与相关疾病的生物信息学分析:综述
Front Genet. 2021 Dec 8;12:813873. doi: 10.3389/fgene.2021.813873. eCollection 2021.
2
Long non-coding RNAs and complex diseases: from experimental results to computational models.长链非编码RNA与复杂疾病:从实验结果到计算模型
Brief Bioinform. 2017 Jul 1;18(4):558-576. doi: 10.1093/bib/bbw060.
3
Long non-coding RNAs: Mechanism of action and functional utility.长链非编码RNA:作用机制与功能应用
Noncoding RNA Res. 2016 Nov 12;1(1):43-50. doi: 10.1016/j.ncrna.2016.11.002. eCollection 2016 Oct.
4
Long non-coding RNAs: From disease code to drug role.长链非编码RNA:从疾病密码到药物作用
Acta Pharm Sin B. 2021 Feb;11(2):340-354. doi: 10.1016/j.apsb.2020.10.001. Epub 2020 Oct 10.
5
The role of long non-coding RNA AFAP1-AS1 in human malignant tumors.长链非编码RNA AFAP1-AS1在人类恶性肿瘤中的作用
Pathol Res Pract. 2018 Oct;214(10):1524-1531. doi: 10.1016/j.prp.2018.08.014. Epub 2018 Aug 20.
6
Long non-coding RNAs in human early embryonic development and their potential in ART.人类早期胚胎发育中的长非编码 RNA 及其在辅助生殖技术中的潜在应用。
Hum Reprod Update. 2016 Dec;23(1):19-40. doi: 10.1093/humupd/dmw035. Epub 2016 Sep 21.
7
LncmiRSRN: identification and analysis of long non-coding RNA related miRNA sponge regulatory network in human cancer.lncmiRSRN:人类癌症中长非编码 RNA 相关 miRNA 海绵调控网络的鉴定与分析。
Bioinformatics. 2018 Dec 15;34(24):4232-4240. doi: 10.1093/bioinformatics/bty525.
8
Analysis of lncRNA-Associated ceRNA Network Reveals Potential lncRNA Biomarkers in Human Colon Adenocarcinoma.长链非编码RNA相关的竞争性内源RNA网络分析揭示了人类结肠腺癌中潜在的长链非编码RNA生物标志物。
Cell Physiol Biochem. 2018;49(5):1778-1791. doi: 10.1159/000493623. Epub 2018 Sep 19.
9
Long noncoding RNAs: Novel insights into hepatocelluar carcinoma.长链非编码 RNA:肝细胞癌的新见解。
Cancer Lett. 2014 Mar 1;344(1):20-27. doi: 10.1016/j.canlet.2013.10.021. Epub 2013 Oct 30.
10
Forging our understanding of lncRNAs in the brain.深入理解脑内长链非编码 RNA。
Cell Tissue Res. 2018 Jan;371(1):55-71. doi: 10.1007/s00441-017-2711-z. Epub 2017 Oct 27.

引用本文的文献

1
Localization is the key to action: regulatory peculiarities of lncRNAs.定位是行动的关键:长链非编码RNA的调控特性
Front Genet. 2024 Dec 16;15:1478352. doi: 10.3389/fgene.2024.1478352. eCollection 2024.
2
Unveiling Key Biomarkers and Mechanisms in Septic Cardiomyopathy: A Comprehensive Transcriptome Analysis.揭示脓毒症性心肌病的关键生物标志物和机制:一项全面的转录组分析
J Inflamm Res. 2024 Dec 23;17:11451-11467. doi: 10.2147/JIR.S486763. eCollection 2024.
3
Unveiling the role of long non-coding RNA MALAT1: a comprehensive review on myocardial infarction.

本文引用的文献

1
webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study.webtWAS:基于转录组关联研究的疾病候选易感性基因资源。
Nucleic Acids Res. 2022 Jan 7;50(D1):D1123-D1130. doi: 10.1093/nar/gkab957.
2
Integration of Multiple-Omics Data to Analyze the Population-Specific Differences for Coronary Artery Disease.多组学数据的整合分析冠心病的人群特异性差异。
Comput Math Methods Med. 2021 Aug 17;2021:7036592. doi: 10.1155/2021/7036592. eCollection 2021.
3
rs1990622 variant associates with Alzheimer's disease and regulates TMEM106B expression in human brain tissues.
揭示长链非编码RNA MALAT1的作用:关于心肌梗死的综合综述
Front Cardiovasc Med. 2024 Aug 7;11:1429858. doi: 10.3389/fcvm.2024.1429858. eCollection 2024.
4
Biological roles of SLC16A1-AS1 lncRNA and its clinical impacts in tumors.SLC16A1-AS1长链非编码RNA的生物学作用及其在肿瘤中的临床影响
Cancer Cell Int. 2024 Mar 30;24(1):122. doi: 10.1186/s12935-024-03285-6.
5
The Emerging Role of Non-Coding RNAs (ncRNAs) in Plant Growth, Development, and Stress Response Signaling.非编码RNA(ncRNAs)在植物生长、发育及应激反应信号传导中的新兴作用
Noncoding RNA. 2024 Feb 7;10(1):13. doi: 10.3390/ncrna10010013.
6
Data Mining of Microarray Datasets in Translational Neuroscience.转化神经科学中微阵列数据集的数据挖掘
Brain Sci. 2023 Sep 14;13(9):1318. doi: 10.3390/brainsci13091318.
7
RNA-Sequencing Characterization of lncRNA and mRNA Functions in Septic Pig Liver Injury.RNA 测序分析在脓毒症猪肝损伤中长链非编码 RNA 和信使 RNA 功能。
Genes (Basel). 2023 Apr 20;14(4):945. doi: 10.3390/genes14040945.
8
LINC01296 promotes proliferation of cutaneous malignant melanoma by regulating miR-324-3p/MAPK1 axis.LINC01296 通过调控 miR-324-3p/MAPK1 轴促进皮肤恶性黑色素瘤的增殖。
Aging (Albany NY). 2022 Dec 2;15(8):2877-2890. doi: 10.18632/aging.204413.
9
Identification of Gefitinib Resistance-Related lncRNA-miRNA-mRNA Regulatory Networks and Corresponding Prognostic Signature in Patients with Lung Adenocarcinoma.肺腺癌患者中吉非替尼耐药相关lncRNA-miRNA-mRNA调控网络的鉴定及相应的预后标志物
Int J Gen Med. 2022 Sep 11;15:7155-7168. doi: 10.2147/IJGM.S369718. eCollection 2022.
10
Research progress regarding long-chain non-coding RNA in lung cancer: a narrative review.肺癌中长链非编码RNA的研究进展:一篇叙述性综述。
J Thorac Dis. 2022 Aug;14(8):3016-3029. doi: 10.21037/jtd-22-897.
rs1990622 变异与阿尔茨海默病相关,并调节人脑组织中 TMEM106B 的表达。
BMC Med. 2021 Jan 19;19(1):11. doi: 10.1186/s12916-020-01883-5.
4
Prediction of lncRNA-disease associations via an embedding learning HOPE in heterogeneous information networks.通过异构信息网络中的嵌入学习HOPE预测长链非编码RNA-疾病关联
Mol Ther Nucleic Acids. 2020 Nov 4;23:277-285. doi: 10.1016/j.omtn.2020.10.040. eCollection 2021 Mar 5.
5
A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs.基于 LncRNA-疾病对的直接和间接特征预测潜在 LncRNA-疾病关联的新型计算模型。
BMC Bioinformatics. 2020 Dec 2;21(1):555. doi: 10.1186/s12859-020-03906-7.
6
rs34331204 regulates TSPAN13 expression and contributes to Alzheimer's disease with sex differences.rs34331204调控四跨膜蛋白13(TSPAN13)的表达,并导致具有性别差异的阿尔茨海默病。
Brain. 2020 Dec 5;143(11):e95. doi: 10.1093/brain/awaa302.
7
LDNFSGB: prediction of long non-coding rna and disease association using network feature similarity and gradient boosting.LDNFSGB:基于网络特征相似性和梯度提升的长非编码 RNA 与疾病关联预测
BMC Bioinformatics. 2020 Sep 3;21(1):377. doi: 10.1186/s12859-020-03721-0.
8
IDSSIM: an lncRNA functional similarity calculation model based on an improved disease semantic similarity method.IDSSIM:一种基于改进疾病语义相似性方法的 lncRNA 功能相似性计算模型。
BMC Bioinformatics. 2020 Jul 31;21(1):339. doi: 10.1186/s12859-020-03699-9.
9
Attentional multi-level representation encoding based on convolutional and variance autoencoders for lncRNA-disease association prediction.基于卷积和方差自动编码器的注意力多层次表示编码在 lncRNA-疾病关联预测中的应用。
Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbaa067.
10
Small Protein Hidden in lncRNA Promotes "Cancerous" RNA Splicing and Tumorigenesis.隐藏在长链非编码RNA中的小蛋白促进“癌性”RNA剪接和肿瘤发生。
Adv Sci (Weinh). 2020 Mar 11;7(10):1903233. doi: 10.1002/advs.201903233. eCollection 2020 May.