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菊科中的间质型端粒重复序列

Interstitial -Type Telomeric Repeats in Asteraceae.

作者信息

Maravilla Alexis J, Rosato Marcela, Álvarez Inés, Nieto Feliner Gonzalo, Rosselló Josep A

机构信息

Jardín Botánico, Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, c/Quart 80, E-46008 Valencia, Spain.

Real Jardín Botánico (RJB), Consejo Superior de Investigaciones Científicas (CSIC), Plaza de Murillo 2, E-28014 Madrid, Spain.

出版信息

Plants (Basel). 2021 Dec 17;10(12):2794. doi: 10.3390/plants10122794.

Abstract

Tandem repeats of telomeric-like motifs at intra-chromosomal regions, known as interstitial telomeric repeats (ITR), have drawn attention as potential markers of structural changes, which might convey information about evolutionary relationships if preserved through time. Building on our previous work that reported outstanding ITR polymorphisms in the genus , we undertook a survey across 132 Asteraceae species, focusing on the six most speciose subfamilies and considering all the ITR data published to date. The goal was to assess whether the presence, site number, and chromosomal location of ITRs convey any phylogenetic signal. We conducted fluorescent in situ hybridization (FISH) using an -type telomeric sequence as a probe on karyotypes obtained from mitotic chromosomes. FISH signals of ITR sites were detected in species of subfamilies Asteroideae, Carduoideae, Cichorioideae, Gymnarhenoideae, and Mutisioideae, but not in Barnadesioideae. Although six small subfamilies have not yet been sampled, altogether, our results suggest that the dynamics of ITR formation in Asteraceae cannot accurately trace the complex karyological evolution that occurred since the early diversification of this family. Thus, ITRs do not convey a reliable signal at deep or shallow phylogenetic levels and cannot help to delimitate taxonomic categories, a conclusion that might also hold for other important families such as Fabaceae.

摘要

染色体内部区域存在的类似端粒基序的串联重复序列,即间质性端粒重复序列(ITR),作为结构变化的潜在标记已引起关注,如果这些序列随时间得以保留,可能会传达有关进化关系的信息。基于我们之前报道该属中显著ITR多态性的工作,我们对132种菊科植物进行了一项调查,重点关注六个物种最多的亚科,并考虑了迄今为止公布的所有ITR数据。目的是评估ITR的存在、位点数量和染色体位置是否传达任何系统发育信号。我们使用一种 - 型端粒序列作为探针,对从有丝分裂染色体获得的核型进行荧光原位杂交(FISH)。在紫菀亚科、菜蓟亚科、菊苣亚科、裸菀亚科和缪氏菊亚科的物种中检测到了ITR位点的FISH信号,但在巴纳德菊亚科中未检测到。尽管六个小亚科尚未进行采样,但总体而言,我们的结果表明,菊科中ITR形成的动态变化无法准确追溯自该科早期多样化以来发生的复杂核型进化。因此,ITR在系统发育的深层或浅层水平上都不能传达可靠的信号,也无助于划分分类类别,这一结论可能也适用于其他重要的科,如豆科。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fd5/8705333/8ac56fc43e06/plants-10-02794-g001.jpg

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