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细尺度环境适应和生长策略驱动叶际多样性。

Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Diversity.

机构信息

Département de Sciences Biologiques, Université de Montréal, Montreal, Quebec, Canada.

Département des Sciences Biologiques, Université du Québec à Montréal, Montreal, Quebec, Canada.

出版信息

mBio. 2022 Feb 22;13(1):e0317521. doi: 10.1128/mbio.03175-21. Epub 2022 Jan 25.

DOI:10.1128/mbio.03175-21
PMID:35073752
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8787475/
Abstract

is a prevalent bacterial genus of the phyllosphere. Despite its ubiquity, little is known about the extent to which its diversity reflects neutral processes like migration and drift, versus environmental filtering of life history strategies and adaptations. In two temperate forests, we investigated how phylogenetic diversity within is structured by biogeography, seasonality, and growth strategies. Using deep, culture-independent barcoded marker gene sequencing coupled with culture-based approaches, we uncovered a considerable diversity of in the phyllosphere. We cultured different subsets of lineages depending upon the temperature of isolation and growth (20°C or 30°C), suggesting long-term adaptation to temperature. To a lesser extent than temperature adaptation, diversity was also structured across large (>100 km; between forests) and small (<1.2 km; within forests) geographical scales, among host tree species, and was dynamic over seasons. By measuring the growth of 79 isolates during different temperature treatments, we observed contrasting growth performances, with strong lineage- and season-dependent variations in growth strategies. Finally, we documented a progressive replacement of lineages with a high-yield growth strategy typical of cooperative, structured communities in favor of those characterized by rapid growth, resulting in convergence and homogenization of community structure at the end of the growing season. Together, our results show how is phylogenetically structured into lineages with distinct growth strategies, which helps explain their differential abundance across regions, host tree species, and time. This work paves the way for further investigation of adaptive strategies and traits within a ubiquitous phyllosphere genus. is a bacterial group tied to plants. Despite the ubiquity of methylobacteria and the importance to their hosts, little is known about the processes driving community dynamics. By combining traditional culture-dependent and -independent (metabarcoding) approaches, we monitored diversity in two temperate forests over a growing season. On the surface of tree leaves, we discovered remarkably diverse and dynamic communities over short temporal (from June to October) and spatial (within 1.2 km) scales. Because we cultured different subsets of diversity depending on the temperature of incubation, we suspected that these dynamics partly reflected climatic adaptation. By culturing strains under laboratory conditions mimicking seasonal variations, we found that diversity and environmental variations were indeed good predictors of growth performances. Our findings suggest that community dynamics at the surface of tree leaves results from the succession of strains with contrasting growth strategies in response to environmental variations.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/1c3466399b93/mbio.03175-21-f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/3bb33c464d0b/mbio.03175-21-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/51ebb63f29c9/mbio.03175-21-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/c55dc448c1ca/mbio.03175-21-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/43b006fbaf0a/mbio.03175-21-f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/1c3466399b93/mbio.03175-21-f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/3bb33c464d0b/mbio.03175-21-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/51ebb63f29c9/mbio.03175-21-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/c55dc448c1ca/mbio.03175-21-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/43b006fbaf0a/mbio.03175-21-f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7cb/8787475/1c3466399b93/mbio.03175-21-f005.jpg

是叶际普遍存在的细菌属。尽管它无处不在,但人们对其多样性在多大程度上反映了迁移和漂移等中性过程,而不是对生活史策略和适应的环境过滤,知之甚少。在两个温带森林中,我们调查了叶际中 的系统发育多样性是如何受到生物地理学、季节性和生长策略的影响的。我们使用深度、非依赖培养的条形码标记基因测序和基于培养的方法,揭示了叶际中 的相当大的多样性。我们根据分离和生长的温度(20°C 或 30°C)培养不同的 谱系子集,这表明对温度有长期的适应。与温度适应相比,多样性在大尺度(>100 公里;森林之间)和小尺度(<1.2 公里;森林内)、宿主树种以及季节之间也存在结构,在测量 79 个分离株在不同温度处理下的生长时,我们观察到了生长策略的强烈谱系和季节依赖性变化。最后,我们记录了具有典型合作、结构化群落高产量生长策略的谱系逐渐取代那些具有快速生长策略的谱系,导致生长季结束时群落结构的趋同和同质化。总的来说,我们的研究结果表明, 是如何通过具有不同生长策略的谱系来进行系统发育结构的,这有助于解释它们在不同区域、宿主树种和时间的不同丰度。这项工作为进一步研究普遍存在的叶际属内的适应策略和特征铺平了道路。

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