Department of Microbiology, School of Medicine, Kyungpook National University, Daegu 41944, Republic of Korea.
Department of Biological Science, Sangji University, Wonju 26339, Republic of Korea.
Int J Syst Evol Microbiol. 2022 Jan;72(1). doi: 10.1099/ijsem.0.005209.
A yellow-coloured, Gram-stain-positive, motile, aerobic and rod-shaped bacteria, designated DKR-3, was isolated from oil-contaminated experimental soil. Strain DKR-3 could grow at pH 5.0-10.5 (optimum, pH 7.0-8.5), at 10-40 °C (optimum, 25-32 °C) and tolerated 3.5 % of NaCl. Phylogenetic analyses based on its 16S rRNA gene sequence indicated that strain DKR-3 formed a lineage within the family and was clustered with members of the genus . Strain DKR-3 had highest 16S rRNA gene sequence similarities to DSM 20111 (98.3 %), JCM 18111 (98.2 %) and DSM 20107 (97.8 %). The predominant respiratory quinone was tetrahydrogenated menaquinone with nine isoprene units [MK-9(H)]. The principal cellular fatty acids were anteiso-C, C and anteiso-C. The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol. The cell-wall diamino acid was l-ornithine whereas rhamnose and glucose were the cell-wall sugars. The DNA G+C content was 74.2mol %. The genome of strain DKR-3 was 3.74 Mb and contained three putative biosynthetic gene clusters. The average nucleotide identity and digital DNA-DNA hybridization relatedness values between strain DKR-3 and its phylogenetically related members were below the species threshold values. Based on a polyphasic study, strain DKR-3 represents a novel species belonging to the genus , for which the name sp. nov. is proposed. The type strain is DKR-3 (=KACC 22071=NBRC 114730).
一株黄色、革兰氏阳性、运动、需氧、杆状细菌,被命名为 DKR-3,从受污染的实验土壤中分离得到。菌株 DKR-3 可以在 pH 值为 5.0-10.5(最佳 pH 值为 7.0-8.5)、10-40°C(最佳温度为 25-32°C)和 3.5%的 NaCl 环境下生长。基于 16S rRNA 基因序列的系统发育分析表明,菌株 DKR-3 形成了一个家族内的谱系,并与属内的成员聚类在一起。菌株 DKR-3 与 DSM 20111(98.3%)、JCM 18111(98.2%)和 DSM 20107(97.8%)的 16S rRNA 基因序列相似度最高。主要的呼吸醌是九异戊二烯单元的四氢甲基萘醌 [MK-9(H)]。主要的细胞脂肪酸是 anteiso-C、C 和 anteiso-C。主要的极性脂是双磷脂酰甘油和磷脂酰甘油。细胞壁二氨基庚二酸是 l-鸟氨酸,而鼠李糖和葡萄糖是细胞壁糖。DNA G+C 含量为 74.2mol%。菌株 DKR-3 的基因组大小为 3.74Mb,包含三个潜在的生物合成基因簇。菌株 DKR-3 与其系统发育相关成员之间的平均核苷酸同一性和数字 DNA-DNA 杂交相关性值均低于种的阈值。基于多相研究,菌株 DKR-3 代表一个新的属种,建议命名为 sp. nov.。其模式菌株为 DKR-3(=KACC 22071=NBRC 114730)。