Statistical Sciences Group, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
PLoS Comput Biol. 2022 Jan 31;18(1):e1008651. doi: 10.1371/journal.pcbi.1008651. eCollection 2022 Jan.
Infectious disease forecasting is an emerging field and has the potential to improve public health through anticipatory resource allocation, situational awareness, and mitigation planning. By way of exploring and operationalizing disease forecasting, the U.S. Centers for Disease Control and Prevention (CDC) has hosted FluSight since the 2013/14 flu season, an annual flu forecasting challenge. Since FluSight's onset, forecasters have developed and improved forecasting models in an effort to provide more timely, reliable, and accurate information about the likely progression of the outbreak. While improving the predictive performance of these forecasting models is often the primary objective, it is also important for a forecasting model to run quickly, facilitating further model development and improvement while providing flexibility when deployed in a real-time setting. In this vein I introduce Inferno, a fast and accurate flu forecasting model inspired by Dante, the top performing model in the 2018/19 FluSight challenge. When pseudoprospectively compared to all models that participated in FluSight 2018/19, Inferno would have placed 2nd in the national and regional challenge as well as the state challenge, behind only Dante. Inferno, however, runs in minutes and is trivially parallelizable, while Dante takes hours to run, representing a significant operational improvement with minimal impact to performance. Forecasting challenges like FluSight should continue to monitor and evaluate how they can be modified and expanded to incentivize the development of forecasting models that benefit public health.
传染病预测是一个新兴领域,有潜力通过提前分配资源、了解情况和制定缓解计划来改善公共卫生。为了探索和实施疾病预测,美国疾病控制与预防中心(CDC)自 2013/14 流感季节以来一直主办 FluSight,这是一项年度流感预测挑战。自 FluSight 启动以来,预测人员一直在开发和改进预测模型,以提供有关疫情可能进展的更及时、可靠和准确的信息。虽然提高这些预测模型的预测性能通常是主要目标,但预测模型快速运行也很重要,这有助于在实时环境中部署时进一步进行模型开发和改进,并提供灵活性。有鉴于此,我介绍了 Inferno,这是一种受 Dante 启发的快速准确的流感预测模型,Dante 是 2018/19 FluSight 挑战中表现最好的模型。当与所有参与 2018/19 FluSight 的模型进行伪前瞻性比较时,Inferno 将在全国和地区挑战以及州挑战中排名第二,仅次于 Dante。然而,Inferno 只需几分钟即可运行,并且可以轻松实现并行化,而 Dante 需要数小时才能运行,这代表了运营方面的重大改进,对性能的影响最小。像 FluSight 这样的预测挑战应继续监测和评估如何对其进行修改和扩展,以鼓励开发有利于公共卫生的预测模型。