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通过一致性提高概率传染病预测。

Improving probabilistic infectious disease forecasting through coherence.

机构信息

Statistical Sciences Group, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.

Department of Biostatistics and Epidemiology, University of Massachusetts-Amherst, Amherst, Massachusetts, United States of America.

出版信息

PLoS Comput Biol. 2021 Jan 6;17(1):e1007623. doi: 10.1371/journal.pcbi.1007623. eCollection 2021 Jan.

Abstract

With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a challenge for forecasting weighted influenza-like illness (wILI) at the national and regional level. Many models produce independent forecasts for each geographical unit, ignoring the constraint that the national wILI is a weighted sum of regional wILI, where the weights correspond to the population size of the region. We propose a novel algorithm that transforms a set of independent forecast distributions to obey this constraint, which we refer to as probabilistically coherent. Enforcing probabilistic coherence led to an increase in forecast skill for 79% of the models we tested over multiple flu seasons, highlighting the importance of respecting the forecasting system's geographical hierarchy.

摘要

据估计,美国每年因流感造成的医疗费用达 104 亿美元,门诊患者达 3140 万人次。流感在美国造成了严重的疾病负担。为了深入了解和提前预警流感的传播,美国疾病控制与预防中心(CDC)开展了一项全国和地区加权类流感样疾病(wILI)预测挑战赛。许多模型针对每个地理区域独立地生成预测结果,而忽略了全国 wILI 是各地区 wILI 的加权总和这一约束条件,其中权重对应于该地区的人口规模。我们提出了一种新颖的算法,可将一组独立的预测分布转换为服从该约束条件,我们称之为概率一致性。在多个流感季节的测试中,我们发现 79%的模型通过强制概率一致性提高了预测能力,这突出了尊重预测系统地理层次结构的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a54/7837472/532e2442d9aa/pcbi.1007623.g001.jpg

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