Department of Biophysics, University of Michigan, Ann Arbor, MI 48109.
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109.
Proc Natl Acad Sci U S A. 2022 Feb 8;119(6). doi: 10.1073/pnas.2109547119.
Cells control the properties of the cytoplasm to ensure proper functioning of biochemical processes. Recent studies showed that cytoplasmic density varies in both physiological and pathological states of cells undergoing growth, division, differentiation, apoptosis, senescence, and metabolic starvation. Little is known about how cellular processes cope with these cytoplasmic variations. Here, we study how a cell cycle oscillator comprising cyclin-dependent kinase (Cdk1) responds to changes in cytoplasmic density by systematically diluting or concentrating cycling egg extracts in cell-like microfluidic droplets. We found that the cell cycle maintains robust oscillations over a wide range of deviations from the endogenous density: as low as 0.2× to more than 1.22× relative cytoplasmic density (RCD). A further dilution or concentration from these values arrested the system in a low or high steady state of Cdk1 activity, respectively. Interestingly, diluting an arrested cytoplasm of 1.22× RCD recovers oscillations at lower than 1× RCD. Thus, the cell cycle switches reversibly between oscillatory and stable steady states at distinct thresholds depending on the direction of tuning, forming a hysteresis loop. We propose a mathematical model which recapitulates these observations and predicts that the Cdk1/Wee1/Cdc25 positive feedback loops do not contribute to the observed robustness, supported by experiments. Our system can be applied to study how cytoplasmic density affects other cellular processes.
细胞控制细胞质的性质以确保生化过程的正常运作。最近的研究表明,细胞质密度在细胞生长、分裂、分化、凋亡、衰老和代谢饥饿等生理和病理状态下都会发生变化。目前还不太清楚细胞过程如何应对这些细胞质变化。在这里,我们通过系统地在细胞样微流控液滴中稀释或浓缩周期蛋白依赖性激酶 (Cdk1) 的循环卵提取物来研究细胞周期振荡器如何应对细胞质密度的变化。我们发现,细胞周期在远离内源性密度的广泛偏差范围内保持着强大的振荡:相对细胞质密度 (RCD) 低至 0.2×至 1.22×以上。进一步稀释或浓缩这些值会分别使系统在 Cdk1 活性的低或高稳态下停止。有趣的是,将 1.22×RCD 的被阻止的细胞质稀释至低于 1×RCD 会恢复振荡。因此,细胞周期在不同的阈值下根据调谐方向在振荡和稳定的稳态之间可逆地切换,形成滞后环。我们提出了一个数学模型来重现这些观察结果,并预测 Cdk1/Wee1/Cdc25 正反馈环对观察到的稳健性没有贡献,这得到了实验的支持。我们的系统可用于研究细胞质密度如何影响其他细胞过程。