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基于数据的水解纳米酶的发现。

Data-informed discovery of hydrolytic nanozymes.

机构信息

College of Engineering and Applied Sciences, Nanjing National Laboratory of Microstructures, Jiangsu Key Laboratory of Artificial Functional Materials, Nanjing University, 210023, Nanjing, Jiangsu, China.

Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, 430079, Wuhan, Hubei, China.

出版信息

Nat Commun. 2022 Feb 11;13(1):827. doi: 10.1038/s41467-022-28344-2.

Abstract

Nanozyme is a collection of nanomaterials with enzyme-like activity but higher environmental tolerance and long-term stability than their natural counterparts. Improving the catalytic activity and expanding the category of nanozymes are prerequisites to complement or even supersede enzymes. However, the development of hydrolytic nanozymes is still challenged by diverse hydrolytic substrates and following complicated mechanisms. Here, two strategies are informed by data to screen and predict catalytic active sites of MOF (metal-organic framework) based hydrolytic nanozymes: (1) to increase the intrinsic activity by finely tuned Lewis acidity of the metal clusters; (2) to improve the density of active sites by shortening the length of ligands. Finally, as-obtained Ce-FMA-MOF-based hydrolytic nanozyme is capable of cleaving phosphate bonds, amide bonds, glycosidic bonds, and even their mixture, biofilms. This work provides a rational methodology to design hydrolytic nanozyme, enriches the diversity of nanozymes, and potentially sheds light on future evolution of enzyme engineering.

摘要

纳米酶是一类具有酶样活性的纳米材料,但比天然酶具有更高的环境耐受性和长期稳定性。提高催化活性和扩大纳米酶的种类是补充甚至取代酶的前提条件。然而,水解纳米酶的发展仍然受到多种水解底物和复杂机制的挑战。在这里,有两种基于数据的策略被用于筛选和预测基于 MOF(金属-有机框架)的水解纳米酶的催化活性位点:(1)通过精细调整金属簇的路易斯酸度来提高内在活性;(2)通过缩短配体的长度来增加活性位点的密度。最后,所得到的基于 Ce-FMA-MOF 的水解纳米酶能够切割磷酸酯键、酰胺键、糖苷键,甚至它们的混合物和生物膜。这项工作为设计水解纳米酶提供了一种合理的方法,丰富了纳米酶的多样性,并可能为未来的酶工程进化提供启示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/815e/8837776/544fe5cfc31c/41467_2022_28344_Fig1_HTML.jpg

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