Cai Bolin, Ma Manting, Zhou Zhen, Kong Shaofen, Zhang Jing, Zhang Xiquan, Nie Qinghua
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Lingnan Guangdong Laboratory of Agriculture, College of Animal Science, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, 510642, Guangdong, China.
J Anim Sci Biotechnol. 2022 Feb 14;13(1):2. doi: 10.1186/s40104-021-00664-1.
Circular RNAs (circRNAs) are a novel class of endogenous ncRNA, which widely exist in the transcriptomes of different species and tissues. Recent studies indicate important roles for circRNAs in the regulation of gene expression by acting as competing endogenous RNAs (ceRNAs). However, the specific role of circRNAs in myogenesis is still poorly understood. In this study, we attempted to systematically identify the circRNAs involved in myogenesis and analyze the biological functions of circRNAs in chicken skeletal muscle development.
In total, 532 circRNAs were identified as being differentially expressed between pectoralis major (PEM) and soleus (SOL) in 7-week-old Xinghua chicken. Among them, a novel circRNA (novel_circ_002621), generated by PTPN4 gene, was named circPTPN4 and identified. circPTPN4 is highly expressed in skeletal muscle, and its expression level is upregulated during myoblast differentiation. circPTPN4 facilitates the proliferation and differentiation of myoblast. Moreover, circPTPN4 suppresses mitochondria biogenesis and activates fast-twitch muscle phenotype. Mechanistically, circPTPN4 can function as a ceRNA to regulate NAMPT expression by sponging miR-499-3p, thus participating in AMPK signaling.
circPTPN4 functions as a ceRNA to regulate NAMPT expression by sponging miR-499-3p, thus promoting the proliferation and differentiation of myoblast, as well as activating fast-twitch muscle phenotype.
环状RNA(circRNAs)是一类新型的内源性非编码RNA,广泛存在于不同物种和组织的转录组中。最近的研究表明,circRNAs作为竞争性内源性RNA(ceRNAs)在基因表达调控中发挥重要作用。然而,circRNAs在肌生成中的具体作用仍知之甚少。在本研究中,我们试图系统地鉴定参与肌生成的circRNAs,并分析circRNAs在鸡骨骼肌发育中的生物学功能。
在7周龄的杏花鸡中,共鉴定出532种在胸大肌(PEM)和比目鱼肌(SOL)之间差异表达的circRNAs。其中,一种由PTPN4基因产生的新型circRNA(novel_circ_002621)被命名为circPTPN4并得以鉴定。circPTPN4在骨骼肌中高表达,其表达水平在成肌细胞分化过程中上调。circPTPN4促进成肌细胞的增殖和分化。此外,circPTPN4抑制线粒体生物发生并激活快肌表型。机制上,circPTPN4可作为ceRNA,通过海绵吸附miR-499-3p来调节NAMPT表达,从而参与AMPK信号传导。
circPTPN4作为ceRNA,通过海绵吸附miR-499-3p来调节NAMPT表达,从而促进成肌细胞的增殖和分化,并激活快肌表型。