Singleton C M, Petriglieri F, Wasmund K, Nierychlo M, Kondrotaite Z, Petersen J F, Peces M, Dueholm M S, Wagner M, Nielsen P H
Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.
ISME J. 2022 Jun;16(6):1605-1616. doi: 10.1038/s41396-022-01212-z. Epub 2022 Feb 25.
The bacterial genus Tetrasphaera encompasses abundant polyphosphate accumulating organisms (PAOs) that are responsible for enhanced biological phosphorus removal (EBPR) in wastewater treatment plants. Recent analyses of genomes from pure cultures revealed that 16S rRNA genes cannot resolve the lineage, and that Tetrasphaera spp. are from several different genera within the Dermatophilaceae. Here, we examine 14 recently recovered high-quality metagenome-assembled genomes from wastewater treatment plants containing full-length 16S rRNA genes identified as Tetrasphaera, 11 of which belong to the uncultured Tetrasphaera clade 3. We find that this clade represents two distinct genera, named here Ca. Phosphoribacter and Ca. Lutibacillus, and reveal that the widely used model organism Tetrasphaera elongata is less relevant for physiological predictions of this uncultured group. Ca. Phosphoribacter incorporates species diversity unresolved at the 16S rRNA gene level, with the two most abundant and often co-occurring species encoding identical V1-V3 16S rRNA gene amplicon sequence variants but different metabolic capabilities, and possibly, niches. Both Ca. P. hodrii and Ca. P. baldrii were visualised using fluorescence in situ hybridisation (FISH), and PAO capabilities were confirmed with FISH-Raman microspectroscopy and phosphate cycling experiments. Ca. Phosphoribacter represents the most abundant former Tetrasphaera lineage and PAO in EPBR systems in Denmark and globally.
四球菌属包含大量聚磷积累生物体(PAOs),这些生物体在废水处理厂中负责强化生物除磷(EBPR)。最近对纯培养物基因组的分析表明,16S rRNA基因无法解析该谱系,并且四球菌属物种来自嗜皮菌科内的几个不同属。在此,我们研究了14个最近从废水处理厂获得的高质量宏基因组组装基因组,这些基因组包含被鉴定为四球菌属的全长16S rRNA基因,其中11个属于未培养的四球菌进化枝3。我们发现这个进化枝代表两个不同的属,在此命名为暂定磷杆菌属(Ca. Phosphoribacter)和暂定泥杆菌属(Ca. Lutibacillus),并揭示广泛使用的模式生物长形四球菌对于这个未培养群体的生理预测相关性较低。暂定磷杆菌属包含在16S rRNA基因水平上未解析的物种多样性,两个最丰富且经常同时出现的物种编码相同的V1 - V3 16S rRNA基因扩增子序列变体,但具有不同的代谢能力以及可能不同的生态位。暂定磷杆菌属的霍氏菌(Ca. P. hodrii)和暂定磷杆菌属的巴尔迪菌(Ca. P. baldrii)均通过荧光原位杂交(FISH)进行了可视化,并且通过FISH - 拉曼光谱和磷酸盐循环实验证实了其PAO能力。暂定磷杆菌属代表丹麦和全球范围内强化生物除磷系统中最丰富的前四球菌谱系和PAO。