Varley Thomas F, Sporns Olaf
Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, United States.
School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, United States.
Front Neurosci. 2022 Feb 11;15:787068. doi: 10.3389/fnins.2021.787068. eCollection 2021.
In the last two decades, there has been an explosion of interest in modeling the brain as a network, where nodes correspond variously to brain regions or neurons, and edges correspond to structural or statistical dependencies between them. This kind of network construction, which preserves spatial, or structural, information while collapsing across time, has become broadly known as "network neuroscience." In this work, we provide an alternative application of network science to neural data: network-based analysis of non-linear time series and review applications of these methods to neural data. Instead of preserving spatial information and collapsing across time, network analysis of time series does the reverse: it collapses spatial information, instead preserving temporally extended dynamics, typically corresponding to evolution through some kind of phase/state-space. This allows researchers to infer a, possibly low-dimensional, "intrinsic manifold" from empirical brain data. We will discuss three methods of constructing networks from nonlinear time series, and how to interpret them in the context of neural data: recurrence networks, visibility networks, and ordinal partition networks. By capturing typically continuous, non-linear dynamics in the form of discrete networks, we show how techniques from network science, non-linear dynamics, and information theory can extract meaningful information distinct from what is normally accessible in standard network neuroscience approaches.
在过去二十年里,将大脑建模为网络的兴趣呈爆发式增长,其中节点分别对应于脑区或神经元,边则对应于它们之间的结构或统计依赖性。这种在跨时间合并的同时保留空间或结构信息的网络构建方式,已被广泛称为“网络神经科学”。在这项工作中,我们提供了网络科学在神经数据方面的另一种应用:基于网络的非线性时间序列分析,并回顾这些方法在神经数据中的应用。与保留空间信息并跨时间合并不同,时间序列的网络分析则相反:它合并空间信息,而是保留时间上扩展的动态,通常对应于通过某种相/状态空间的演化。这使研究人员能够从经验性脑数据中推断出一个可能低维的“内在流形”。我们将讨论从非线性时间序列构建网络的三种方法,以及如何在神经数据的背景下对它们进行解释:递归网络、可见性网络和有序划分网络。通过以离散网络的形式捕捉通常连续的非线性动态,我们展示了网络科学、非线性动力学和信息论中的技术如何能够提取与标准网络神经科学方法中通常可获取的信息不同的有意义信息。