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基于新感染病例波的第一个拐点估计最大繁殖数并识别传播率:以COVID-19疫情为例

Maximal reproduction number estimation and identification of transmission rate from the first inflection point of new infectious cases waves: COVID-19 outbreak example.

作者信息

Waku J, Oshinubi K, Demongeot J

机构信息

UMMISCO UMI IRD 209 & LIRIMA, University of Yaoundé I, P.O Box 337 Yaoundé, Cameroon.

Laboratory AGEIS EA 7407, Team Tools for e-Gnosis Medical & Labcom CNRS/UGA/OrangeLabs Telecom4Health, Faculty of Medicine, University Grenoble Alpes (UGA), 38700 La Tronche, France.

出版信息

Math Comput Simul. 2022 Aug;198:47-64. doi: 10.1016/j.matcom.2022.02.023. Epub 2022 Feb 25.

Abstract

The dynamics of COVID-19 pandemic varies across countries and it is important for​ researchers to study different kind of phenomena observed at different stages of the waves during the epidemic period. Our interest in this paper is not to model what happened during the endemic state but during the epidemic state. We proposed a continuous formulation of a unique maximum reproduction number estimate with an assumption that the epidemic curve is in form of the Gaussian curve and then compare the model with the discrete form and the observed basic reproduction number during the contagiousness period considered. Furthermore, we estimated the transmission rate from identification of the first inflection point of a wave of the curve of daily new infectious cases using the Bernoulli S-I (Susceptible-Infected) equation. We applied this new method to the real data from Cameroon COVID-19 outbreak both at national and regional levels. High correlation was observed between the socio-economic parameters and epidemiology parameters at regional level in Cameroon. Also, the method was applied to the second wave COVID-19 outbreak for the world data which is a period the phenomena we are considering were observed. Lastly, it was observed that the models presented results correspond with the epidemic dynamics in Cameroon and World data. We recommend that it is important to study what happened during the growth inflection point as some countries data did not climax.

摘要

新冠疫情的动态在不同国家有所不同,研究人员研究疫情期间不同阶段观察到的各种现象非常重要。我们在本文中的兴趣不是对地方病状态期间发生的情况进行建模,而是对疫情状态期间的情况进行建模。我们提出了一种连续的公式,用于估计唯一的最大繁殖数,假设疫情曲线呈高斯曲线形式,然后将该模型与离散形式以及在考虑的传染期内观察到的基本繁殖数进行比较。此外,我们使用伯努利S-I(易感-感染)方程,通过确定每日新增感染病例曲线一波的第一个拐点来估计传播率。我们将这种新方法应用于喀麦隆新冠疫情爆发的国家和地区层面的实际数据。在喀麦隆,地区层面的社会经济参数和流行病学参数之间观察到高度相关性。此外,该方法还应用于世界数据的第二波新冠疫情爆发,这是我们所考虑现象被观察到的时期。最后,观察到所呈现模型的结果与喀麦隆和世界数据中的疫情动态相符。我们建议研究增长拐点期间发生的情况很重要,因为一些国家的数据并未达到顶峰。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0468/8872795/2c7b42b226c5/gr1_lrg.jpg

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