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海洋硅藻cf. RCC75的基因组草图组装及测序数据集

Draft genome assembly and sequencing dataset of the marine diatom cf. RCC75.

作者信息

Sorokina Maria, Barth Emanuel, Zulfiqar Mahnoor, Kwantes Michiel, Pohnert Georg, Steinbeck Christoph

机构信息

Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Lessingstrasse 8, Jena, Germany.

Bioinformatics Core Facility, Friedrich Schiller University, Leutragraben 1, Jena, Germany.

出版信息

Data Brief. 2022 Feb 5;41:107931. doi: 10.1016/j.dib.2022.107931. eCollection 2022 Apr.

DOI:10.1016/j.dib.2022.107931
PMID:35242913
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8866145/
Abstract

Diatoms (Bacillariophyceae) are a major constituent of the phytoplankton and have a universally recognized ecological importance. Between 1,000 and 1,300 diatom genera have been described in the literature, but only 10 nuclear genomes have been published and made available to the public up to date. is a cosmopolitan marine diatom, principally occurring in coastal regions, and is one of the most abundant members of the genus. Here we present a draft assembly of the RCC75 genome, obtained from PacBio and Illumina NovaSeq data. This dataset will expand the knowledge of the Bacillariophyceae genetics and contribute to the global understanding of phytoplankton's physiological, ecological, and environmental functioning.

摘要

硅藻(硅藻纲)是浮游植物的主要组成部分,具有公认的重要生态意义。文献中已描述了1000至1300个硅藻属,但截至目前仅有10个核基因组已发表并向公众公开。三角褐指藻是一种世界性的海洋硅藻,主要出现在沿海地区,是褐指藻属中数量最多的成员之一。在此,我们展示了从PacBio和Illumina NovaSeq数据获得的三角褐指藻RCC75基因组草图组装。该数据集将扩展对硅藻纲遗传学的认识,并有助于全球了解浮游植物的生理、生态和环境功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/518d/8866145/c6e4d91050fd/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/518d/8866145/c6e4d91050fd/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/518d/8866145/c6e4d91050fd/gr1.jpg

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3
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