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比较基因组学揭示了……的进化特征、交配策略及与致病性相关的基因变异。

Comparative Genomics Reveals Evolutionary Traits, Mating Strategies, and Pathogenicity-Related Genes Variation of .

作者信息

Yu Chengming, Diao Yufei, Lu Quan, Zhao Jiaping, Cui Shengnan, Xiong Xiong, Lu Anna, Zhang Xingyao, Liu Huixiang

机构信息

Shandong Research Center for Forestry Harmful Biological Control Engineering and Technology, College of Plant Protection, Shandong Agricultural University, Taian, China.

Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing, China.

出版信息

Front Microbiol. 2022 Feb 23;13:800981. doi: 10.3389/fmicb.2022.800981. eCollection 2022.

Abstract

, as a major family of the largest class of kingdom fungi , encompasses phytopathogens, saprobes, and endophytes. Many members of this family are opportunistic phytopathogens with a wide host range and worldwide geographical distribution, and can infect many economically important plants, including food crops and raw material plants for biofuel production. To date, however, little is known about the family evolutionary characterization, mating strategies, and pathogenicity-related genes variation from a comparative genome perspective. Here, we conducted a large-scale whole-genome comparison of 271 , including 19 species in . The comparative genome analysis provided a clear classification of in and indicated that the evolution of lifestyle within underwent four major transitions from non-phytopathogenic to phytopathogenic. Mating strategies analysis demonstrated that at least 3 transitions were found within from heterothallism to homothallism. Additionally, pathogenicity-related genes contents in different genera varied greatly, indicative of genus-lineage expansion within . These findings shed new light on evolutionary traits, mating strategies and pathogenicity-related genes variation of .

摘要

作为真菌界最大类群的一个主要家族,包含植物病原体、腐生菌和内生菌。该家族的许多成员是机会性植物病原体,寄主范围广泛,地理分布遍及全球,能够感染许多具有经济重要性的植物,包括粮食作物和生物燃料生产的原料植物。然而,迄今为止,从比较基因组的角度来看,对于该家族的进化特征、交配策略以及与致病性相关的基因变异了解甚少。在此,我们对271个[物种名称未给出]进行了大规模全基因组比较,其中包括该家族中的19个物种。比较基因组分析为该家族中的[物种名称未给出]提供了清晰的分类,并表明该家族内生活方式的进化经历了从非植物致病性到植物致病性的四个主要转变。交配策略分析表明,在该家族内至少发现了3次从异宗配合到同宗配合的转变。此外,不同属中与致病性相关的基因含量差异很大,表明该家族内属系的扩张。这些发现为该家族的进化特征、交配策略以及与致病性相关的基因变异提供了新的线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7bbc/8905617/1dcadbcae42d/fmicb-13-800981-g001.jpg

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