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评估健康成年人肠道微生物群落多样性在法医学中的应用。

Assess the diversity of gut microbiota among healthy adults for forensic application.

机构信息

Department of Forensic Genetics, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, Sichuan, China.

Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China.

出版信息

Microb Cell Fact. 2022 Mar 24;21(1):46. doi: 10.1186/s12934-022-01769-6.

Abstract

BACKGROUND

Human gut microbiota is individually unique that hints the microbiota in fecal traces left in the crime scene could act as a potential biomarker for forensic personal identification. Next-generation DNA sequencing and bioinformatic analysis of fecal samples are revolutionizing our insights into gut microbial communities. While the formation of the gut microbiota is known to be multifactorial, it is unclear whether these characteristics can be applied to forensic applications. Therefore, the gut microbiota of healthy adults with different traits was investigated in this study.

RESULTS

Based on the STAMP analysis of each study group, the difference in gut microbiota composition of male and female subjects was observed. The male group was characterized by taxa in the phylum Proteobacteria, while the female group was described by Synergistetes phylum. The gut bacterial community assembly mechanism was mainly affected by the deterministic process. In addition, gut microbiota composition showed meaningful discrimination in each of the BMI groups. At the phylum level, in male subjects, increased representative phyla were Patescibacteria (p < 0.05) in the underweight group and Bacteroidetes (p < 0.05) in the normal-weight group, while in the female group, the significantly different phyla were Bacteroidetes, Firmicutes, and Actinobacteria. At the genus level, 44 unique genera were found to be significantly distinct across BMI study groups. By Fisher's Linear Discriminant Analysis, ninety-four point four percent (94.4%) of original BMI grouped subjects were correctly classified. The linear regression analysis model showed an accuracy of seventy-four percent (74%) in predicting body type.

CONCLUSION

In conclusion, subjects with different individual characters have specific gut microbiota, and can be discriminated by bioinformatics methods, suggesting it is promising to apply gut microbiota to forensic personal identification.

摘要

背景

人类肠道微生物组具有个体独特性,这表明在犯罪现场留下的粪便痕迹中的微生物可以作为法医个体识别的潜在生物标志物。粪便样本的下一代 DNA 测序和生物信息学分析正在彻底改变我们对肠道微生物群落的认识。虽然肠道微生物组的形成是多因素的,但尚不清楚这些特征是否可以应用于法医应用。因此,本研究调查了具有不同特征的健康成年人的肠道微生物组。

结果

基于每个研究组的 STAMP 分析,观察到男性和女性受试者肠道微生物组成的差异。男性组的特征是厚壁菌门的分类群,而女性组则由互养菌门描述。肠道细菌群落组装机制主要受确定性过程的影响。此外,肠道微生物组成在每个 BMI 组中都表现出有意义的区分。在门水平上,在男性受试者中,代表属增加的是 Patescibacteria(p<0.05)在体重不足组和 Bacteroidetes(p<0.05)在正常体重组,而在女性组中,显著不同的门是拟杆菌门、厚壁菌门和放线菌门。在属水平上,发现 44 个独特的属在 BMI 研究组之间存在显著差异。通过 Fisher 的线性判别分析,94.4%的原始 BMI 分组受试者被正确分类。线性回归分析模型在预测体型方面的准确率为 74%。

结论

总之,具有不同个体特征的受试者具有特定的肠道微生物组,可以通过生物信息学方法进行区分,这表明将肠道微生物组应用于法医个体识别具有很大的前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abc2/8944125/280dafec6381/12934_2022_1769_Fig1_HTML.jpg

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