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泰国再生水中和污水污泥中人类博卡病毒的分子特征。

Molecular characterization of human bocavirus in recycled water and sewage sludge in Thailand.

机构信息

Department of Microbiology, Faculty of Public Health, Mahidol University, 420/1 Ratchawithi Road, Bangkok 10400, Thailand.

Department of Epidemiology, Faculty of Public Health, Mahidol University, 420/1 Ratchawithi Road, Bangkok 10400, Thailand.

出版信息

Infect Genet Evol. 2022 Jun;100:105276. doi: 10.1016/j.meegid.2022.105276. Epub 2022 Mar 31.

Abstract

The study aimed to assess the presence and molecular characterization of human bocavirus (HBoV) in recycled water and sewage sludge samples in Thailand. One hundred and two recycled water and eighty-six sewage sludge samples collected from a wastewater treatment plant were tested for the presence of HBoV using nested PCR with broad-range primer pairs targeting the capsid proteins VP1 and VP2. HBoV DNA was detected in recycled water of 9/102 (8.8%) samples and sewage sludge of 27/86 (31.4%) samples. Based on DNA sequencing and phylogenetic analysis, the HBoV DNA sequences had 98.8-100.0% nucleotide identity to the sequences from HBoV reported globally. Thirty-five HBoV-positive samples were identified to genotypes as the predominant HBoV2; 26 followed by HBoV3; 8 and the rare HBoV4; 1 sample. Concerning recycled water, HBoV2 was detected in 3 (2.9%) and HBoV3 was detected in 5 (4.9%) of all samples. The sewage sludge samples were characterized as HBoV2 in 23 (26.7%), HBoV3 in 3 (3.5%) and HBoV4 in 1 (1.2%) of all samples. The frequency of HBoV detected in recycled water and sewage sludge samples significantly differed in sample type (p-value = 0.007). The findings of three HBoV genotypes in recycled water and sewage sludge emphasized the circulation of the virus in the environment and the potential source of transmission to the community.

摘要

本研究旨在评估泰国再生水中和污水污泥样本中人类博卡病毒(HBoV)的存在和分子特征。使用针对衣壳蛋白 VP1 和 VP2 的广谱引物对,从一家废水处理厂采集的 102 份再生水和 86 份污水污泥样本进行 HBoV 存在检测。在 9/102(8.8%)份再生水样本和 27/86(31.4%)份污水污泥样本中检测到 HBoV DNA。基于 DNA 测序和系统进化分析,HBoV DNA 序列与全球报道的 HBoV 序列具有 98.8-100.0%的核苷酸同一性。35 份 HBoV 阳性样本被鉴定为主要的 HBoV2 基因型;26 份紧随其后的是 HBoV3;8 份为罕见的 HBoV4;1 份。关于再生水,所有样本中 HBoV2 检测到 3(2.9%)份,HBoV3 检测到 5(4.9%)份。污水污泥样本中 HBoV2 特征为 23(26.7%)份,HBoV3 特征为 3(3.5%)份,HBoV4 特征为 1(1.2%)份。再生水和污水污泥样本中 HBoV 的检出频率在样本类型上存在显著差异(p 值=0.007)。在再生水和污水污泥中发现三种 HBoV 基因型,强调了该病毒在环境中的循环以及向社区传播的潜在来源。

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