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一种铁死亡相关基因对特征作为肺腺癌的原发性预后生物标志物。

One Ferroptosis-Related Gene-Pair Signature Serves as an Original Prognostic Biomarker in Lung Adenocarcinoma.

作者信息

Li Lei, Wang Buhai

机构信息

Department of Oncology, Northern Jiangsu People's Hospital, Yangzhou, China.

Graduate School, Dalian Medical University, Dalian, China.

出版信息

Front Genet. 2022 Mar 16;13:841712. doi: 10.3389/fgene.2022.841712. eCollection 2022.

Abstract

Lung adenocarcinoma is the most common histological subtype of lung cancer which causes the largest number of deaths worldwide. Exploring reliable prognostic biomarkers based on biological behaviors and molecular mechanisms is essential for predicting prognosis and individualized treatment strategies. Ferroptosis is a recently discovered type of regulated cell death. We downloaded ferroptosis-related genes from the literature and collected transcriptome profiles of lung adenocarcinoma from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) to construct ferroptosis-related gene-pair matrixes. Then, we performed the least absolute shrinkage and selection operator regression to build our prognostic ferroptosis-related gene-pair index (FRGPI) in TCGA training matrix. Our study validated FRGPI through ROC curves, Kaplan-Meier methods, and Cox hazard analyses in TCGA and GEO cohorts. The optimal cut-off 0.081 stratified patients into low- and high-FRGPI groups. Also, the low-FRGPI group had a significantly better prognosis than the high-FRGPI group. For further study, we analyzed differentially expressed ferroptosis-related genes between high- and low-FRGPI groups. Gene set enrichment analysis (GSEA) enrichment maps indicated that "cell cycle," "DNA replication," "proteasome," and "the p53 signaling pathway" were significantly enriched in the high-FRGPI group. The high-FRGPI group also presented higher infiltration of M1 macrophages. Meanwhile, there were few differences in adaptive immune responses between high- and low-FRGPI groups. In conclusion, FRGPI was an independent prognostic biomarker which might be beneficial for guiding individualized tumor therapy.

摘要

肺腺癌是肺癌最常见的组织学亚型,在全球导致死亡人数最多。基于生物学行为和分子机制探索可靠的预后生物标志物对于预测预后和制定个体化治疗策略至关重要。铁死亡是最近发现的一种程序性细胞死亡类型。我们从文献中下载了与铁死亡相关的基因,并收集了来自癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)的肺腺癌转录组图谱,以构建与铁死亡相关的基因对矩阵。然后,我们进行了最小绝对收缩和选择算子回归,以在TCGA训练矩阵中构建我们的预后铁死亡相关基因对指数(FRGPI)。我们的研究通过ROC曲线、Kaplan-Meier方法以及在TCGA和GEO队列中的Cox风险分析对FRGPI进行了验证。最佳截断值0.081将患者分为低FRGPI组和高FRGPI组。此外,低FRGPI组的预后明显优于高FRGPI组。为了进一步研究,我们分析了高FRGPI组和低FRGPI组之间差异表达的铁死亡相关基因。基因集富集分析(GSEA)富集图谱表明,“细胞周期”“DNA复制 ”“蛋白酶体”和“p53信号通路”在高FRGPI组中显著富集。高FRGPI组还表现出更高的M1巨噬细胞浸润。同时,高FRGPI组和低FRGPI组之间的适应性免疫反应几乎没有差异。总之,FRGPI是一种独立的预后生物标志物,可能有助于指导个体化肿瘤治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ae4/8965883/077728921e71/fgene-13-841712-g001.jpg

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