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马铃薯转化酶基因家族的全基因组分析及非生物胁迫条件下的表达谱分析

Genome-Wide Analysis of Invertase Gene Family, and Expression Profiling under Abiotic Stress Conditions in Potato.

作者信息

Abbas Asad, Shah Adnan Noor, Shah Anis Ali, Nadeem Muhammad Azhar, Alsaleh Ahmad, Javed Talha, Alotaibi Saqer S, Abdelsalam Nader R

机构信息

School of Horticulture, Anhui Agricultural University, Hefei 230036, China.

Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan 64200, Pakistan.

出版信息

Biology (Basel). 2022 Mar 31;11(4):539. doi: 10.3390/biology11040539.

Abstract

The potato is one of the most important and valuable crops in terms of consumption worldwide. However, abiotic stressors are the critical delimiters for the growth and productivity of potato. Invertase genes play key roles in carbon metabolism, plant development, and responses to stress stimuli. Therefore, a comprehensive genome-wide identification, characterization and expression analysis of invertase genes was performed in the potato. The current study identified 19 invertase genes, randomly distributed throughout the potato genome. To further elucidate their evolutionary, functional and structural relationship within family and with other plant species, we performed sequence and phylogenetic analysis, which segregated invertase genes into two main groups based on their sequence homology. A total of 11 genes are included in acidic invertases and 8 genes are in neutral or alkaline invertases, elucidating their functional divergence. Tissue specific expression analyses (RNA sequencing and qRT-PCR) of different plant tissues showed differential expression pattern. Invertase genes have higher expression in flower, leaf, root and shoot tissues, while under abiotic stress conditions, the expression of the invertase gene is significantly upregulated. Results of this study revealed that vacuolar and cell wall destined invertases are mainly the functional member genes of the invertase family. This study provides comprehensive data and knowledge about genes in for future genetic and epigenetic studies.

摘要

就全球消费量而言,马铃薯是最重要且最具价值的作物之一。然而,非生物胁迫因素是马铃薯生长和生产力的关键限制因素。转化酶基因在碳代谢、植物发育以及对胁迫刺激的反应中发挥着关键作用。因此,对马铃薯中的转化酶基因进行了全面的全基因组鉴定、表征和表达分析。当前研究鉴定出19个转化酶基因,它们随机分布于马铃薯基因组中。为了进一步阐明它们在家族内部以及与其他植物物种之间的进化、功能和结构关系,我们进行了序列和系统发育分析,根据序列同源性将转化酶基因分为两个主要组。酸性转化酶共有11个基因,中性或碱性转化酶有8个基因,阐明了它们的功能差异。对不同植物组织的组织特异性表达分析(RNA测序和qRT-PCR)显示出差异表达模式。转化酶基因在花、叶、根和茎组织中表达较高,而在非生物胁迫条件下,转化酶基因的表达显著上调。本研究结果表明,液泡和细胞壁靶向的转化酶主要是转化酶家族的功能成员基因。本研究为未来的遗传和表观遗传研究提供了关于马铃薯中基因的全面数据和知识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c8d/9032393/bb37d4ecb446/biology-11-00539-g001.jpg

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