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从神经元模拟中计算细胞外电势。

Computing Extracellular Electric Potentials from Neuronal Simulations.

机构信息

Faculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.

Department of Informatics, University of Oslo, Oslo, Norway.

出版信息

Adv Exp Med Biol. 2022;1359:179-199. doi: 10.1007/978-3-030-89439-9_8.

DOI:10.1007/978-3-030-89439-9_8
PMID:35471540
Abstract

Measurements of electric potentials from neural activity have played a key role in neuroscience for almost a century, and simulations of neural activity is an important tool for understanding such measurements. Volume conductor (VC) theory is used to compute extracellular electric potentials stemming from neural activity, such as extracellular spikes, multi-unit activity (MUA), local field potentials (LFP), electrocorticography (ECoG), and electroencephalography (EEG). Further, VC theory is also used inversely to reconstruct neuronal current source distributions from recorded potentials through current source density methods. In this book chapter, we show how VC theory can be derived from a detailed electrodiffusive theory for ion concentration dynamics in the extracellular medium, and we show what assumptions must be introduced to get the VC theory on the simplified form that is commonly used by neuroscientists. Furthermore, we provide examples of how the theory is applied to compute spikes, LFP signals, and EEG signals generated by neurons and neuronal populations.

摘要

电势能的测量在神经科学中已经有近一个世纪的历史,而神经活动的模拟则是理解这些测量的重要工具。容积导体(VC)理论用于计算源自神经活动的细胞外电势能,如细胞外尖峰、多单位活动(MUA)、局部场电位(LFP)、皮层电图(ECoG)和脑电图(EEG)。此外,VC 理论还通过电流源密度方法,从记录的电势中反演重建神经元电流源分布。在本章中,我们展示了如何从细胞外介质中离子浓度动力学的详细电扩散理论中推导出 VC 理论,以及为了得到神经科学家常用的简化形式的 VC 理论,必须引入哪些假设。此外,我们还提供了一些例子,说明如何应用该理论来计算由神经元和神经元群体产生的尖峰、LFP 信号和 EEG 信号。

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1
Computing Extracellular Electric Potentials from Neuronal Simulations.从神经元模拟中计算细胞外电势。
Adv Exp Med Biol. 2022;1359:179-199. doi: 10.1007/978-3-030-89439-9_8.
2
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0.神经网络活动的多模态建模:使用LFPy 2.0计算局部场电位、皮层脑电图、脑电图和脑磁图信号
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LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons.LFPy:用于模拟详细模型神经元产生的细胞外电势的生物物理工具。
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本文引用的文献

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Computation of the electroencephalogram (EEG) from network models of point neurons.从点神经元的网络模型计算脑电图(EEG)。
PLoS Comput Biol. 2021 Apr 2;17(4):e1008893. doi: 10.1371/journal.pcbi.1008893. eCollection 2021 Apr.
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Training deep neural density estimators to identify mechanistic models of neural dynamics.训练深度神经网络密度估计器以识别神经动力学的机制模型。
Elife. 2020 Sep 17;9:e56261. doi: 10.7554/eLife.56261.
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MEArec: A Fast and Customizable Testbench Simulator for Ground-truth Extracellular Spiking Activity.
加权有向连接体中的反应-扩散模型。
PLoS Comput Biol. 2022 Oct 28;18(10):e1010507. doi: 10.1371/journal.pcbi.1010507. eCollection 2022 Oct.
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Computation of the electroencephalogram (EEG) from network models of point neurons.从点神经元的网络模型计算脑电图(EEG)。
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Finite Element Simulation of Ionic Electrodiffusion in Cellular Geometries.细胞几何结构中离子电扩散的有限元模拟
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Estimation of neural network model parameters from local field potentials (LFPs).从局部场电位 (LFPs) 估计神经网络模型参数。
PLoS Comput Biol. 2020 Mar 10;16(3):e1007725. doi: 10.1371/journal.pcbi.1007725. eCollection 2020 Mar.
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Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex.系统整合结构和功能数据到鼠初级视觉皮层的多尺度模型中。
Neuron. 2020 May 6;106(3):388-403.e18. doi: 10.1016/j.neuron.2020.01.040. Epub 2020 Mar 5.
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A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model.使用多域电扩散模型对皮质扩散性抑制中谷氨酸和 NMDA 受体作用的计算研究。
PLoS Comput Biol. 2019 Dec 2;15(12):e1007455. doi: 10.1371/journal.pcbi.1007455. eCollection 2019 Dec.
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Deep Brain Stimulation and Drug-Resistant Epilepsy: A Review of the Literature.深部脑刺激与药物难治性癫痫:文献综述
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The Scientific Case for Brain Simulations.大脑模拟的科学依据。
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Cortical Electrocorticogram (ECoG) Is a Local Signal.皮层脑电图(ECoG)是一种局部信号。
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