Carmody Caitlin M, Farquharson Emma L, Nugen Sam R
Department of Food Science, Cornell University, Ithaca, NY 14853, USA.
Phage (New Rochelle). 2022 Mar;3(1):59-63. doi: 10.1089/phage.2022.0005. Epub 2022 Mar 18.
Increasing the quantity and detail of bacteriophage genomic data is critical to broadening our understanding of how bacteriophages operate to allow us to harness their unique properties for biotechnology advancements. Here we present the complete sequence of phage SV76's assembled and annotated genome (Accession OM339528). SV76 has previously been classified as a T4-like bacteriophage belonging to the genus within the family of contractile tailed bacteriophages.
Whole genome sequencing, assembly, and annotation was performed on SV76. Double-agar spot assays were utilized to determine SV76's host range against a panel of 72 isolates meant to represent the diversity of , as well as a series of knockouts designed to identify required receptor binding proteins. The genome and host range were compared to the closely related phage, T2.
Spot assays revealed that SV76 could plaque on 10 of the 72 strains (13.9 %) and nine of the nine K12 single gene knockout of known phage receptors (100%). SV76 did not plate on a indicating suggesting a requirement as a receptor binding protein.
SV76 is closely related to T2 with similar host ranges within ECOR. This study presents novel host range and genomic data on SV76 phage, providing a foundation for future studies to further characterize SV76 to understand more about SV76 and other T4-like phages that can be applied to create novel biotechnologies.
增加噬菌体基因组数据的数量和细节对于拓宽我们对噬菌体如何运作的理解至关重要,这使我们能够利用其独特特性推动生物技术进步。在此,我们展示了噬菌体SV76组装和注释后的完整基因组序列(登录号OM339528)。SV76先前被归类为一种类T4噬菌体,属于收缩尾噬菌体科中的一个属。
对SV76进行了全基因组测序、组装和注释。利用双层琼脂斑点试验来确定SV76对一组72个分离株的宿主范围,这些分离株旨在代表[具体菌属]的多样性,以及一系列用于鉴定所需受体结合蛋白的基因敲除菌株。将该基因组和宿主范围与密切相关的噬菌体T2进行了比较。
斑点试验表明,SV76能在72个菌株中的10个(13.9%)以及9个已知噬菌体受体的K12单基因敲除菌株中的9个(100%)上形成噬菌斑。SV76不能在[某菌株]上形成噬菌斑,表明[某蛋白]作为受体结合蛋白的必要性。
SV76与T2密切相关,在大肠杆菌参考菌株(ECOR)中有相似的宿主范围。本研究展示了关于SV76噬菌体的新宿主范围和基因组数据,为未来进一步表征SV76以更深入了解SV76及其他可用于开发新型生物技术的类T4噬菌体的研究奠定了基础。