Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, 99, Daehak-ro, Yuseong, Daejeon 34134, Republic of Korea.
Int J Syst Evol Microbiol. 2022 May;72(5). doi: 10.1099/ijsem.0.005363.
A novel Gram-stain-negative, rod-shaped, aerobic and motile bacterium designated strain UL073 was isolated from a forest soil of an island, and subjected to taxonomic characterization. Strain UL073 grew at 10-37 °C (optimum, 30 °C), at pH 5.0-10.0 (optimum, pH 7.0) and in the presence of 0-3 % NaCl (optimum, 0 %), respectively. Strain UL073 showed the highest sequence similarity to PE08 based on 16S rRNA gene analysis with a sequence similarity of 98.08 %, which was well below the suggested cutoff for species distinction. The 16S rRNA gene tree as well as the multilocus sequence analysis and genome-based trees indicated the independent taxonomic position of strain UL073, and the orthologous average nucleotide identity and DNA-DNA hybridization values between strain UL073 and related species were no higher than 84.7 and 28.3% respectively, thus confirming the distinctive taxonomic position of the strain. The chemotaxonomic properties were consistent with those of the genus, as the major fatty acids of the strain were a summed feature consisting of C ω7/C ω6 (31.4 %), another summed feature consisting of C ω7/C ω6 (23.1 %), and C (22.0 %), the major respiratory quinone was ubiquinone 9, and the major polar lipids were phosphatidylethanolamine and diphosphatidylglycerol. The genome size and DNA G+C content of strain UL073 were 4.87 Mbp and 65.9 mol%. On the basis of phenotypic and phylogenetic evidence, strain UL073 should be classified as representing a novel species of , for which the name sp. nov. (type strain=UL073=KCTC 82407=JCM 34511) is proposed.
一株新型革兰氏阴性、杆状、需氧和能动细菌,被命名为 UL073 菌株,从一个岛屿的森林土壤中分离出来,并进行了分类鉴定。菌株 UL073 在 10-37°C(最佳温度 30°C)、pH 值 5.0-10.0(最佳 pH 值 7.0)和 0-3%NaCl(最佳 0%)的条件下生长。根据 16S rRNA 基因分析,菌株 UL073 与 PE08 的序列相似性最高,为 98.08%,远低于种间区分的建议截止值。16S rRNA 基因树以及多位点序列分析和基于基因组的树表明,菌株 UL073 具有独立的分类地位,菌株 UL073 与相关种之间的直系同源平均核苷酸同一性和 DNA-DNA 杂交值均不高于 84.7%和 28.3%,因此证实了该菌株的独特分类地位。化学分类特征与属的特征一致,因为该菌株的主要脂肪酸是由 Cω7/Cω6(31.4%)组成的总和特征,由 Cω7/Cω6(23.1%)和 C(22.0%)组成的另一个总和特征,主要呼吸醌是泛醌 9,主要极性脂是磷脂酰乙醇胺和双磷脂酰甘油。菌株 UL073 的基因组大小和 DNA G+C 含量分别为 4.87 Mbp 和 65.9 mol%。基于表型和系统发育证据,菌株 UL073 应归类为代表一个新的 属种,建议将其命名为 sp. nov.(模式菌株=UL073=KCTC 82407=JCM 34511)。