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探究雌激素受体α抑制作用的起源:大规模定量构效关系研究

Probing the origin of estrogen receptor alpha inhibition large-scale QSAR study.

作者信息

Suvannang Naravut, Preeyanon Likit, Malik Aijaz Ahmad, Schaduangrat Nalini, Shoombuatong Watshara, Worachartcheewan Apilak, Tantimongcolwat Tanawut, Nantasenamat Chanin

机构信息

Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University Bangkok 10700 Thailand

Department of Community Medical Technology, Faculty of Medical Technology, Mahidol University Bangkok 10700 Thailand.

出版信息

RSC Adv. 2018 Mar 27;8(21):11344-11356. doi: 10.1039/c7ra10979b. eCollection 2018 Mar 21.

DOI:10.1039/c7ra10979b
PMID:35542807
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9079045/
Abstract

Estrogen is an important component for the sustenance of normal physiological functions of the mammary glands, particularly for growth and differentiation. Approximately, two-thirds of breast cancers are positive for estrogen receptor (ERs), which is a predisposing factor for the growth of breast cancer cells. As such, ERα represents a lucrative therapeutic target for breast cancer that has attracted wide interest in the search for inhibitory agents. However, the conventional laboratory processes are cost- and time-consuming. Thus, it is highly desirable to develop alternative methods such as quantitative structure-activity relationship (QSAR) models for predicting ER-mediated endocrine agitation as to simplify their prioritization for future screening. In this study, we compiled and curated a large, non-redundant data set of 1231 compounds with ERα inhibitory activity (pIC). Using comprehensive validation tests, it was clearly observed that the model utilizing the substructure count as descriptors, performed well considering two objectives: using less descriptors for model development and achieving high predictive performance ( = 0.94, = 0.73, and = 0.73). It is anticipated that our proposed QSAR model may become a useful high-throughput tool for identifying novel inhibitors against ERα.

摘要

雌激素是维持乳腺正常生理功能的重要成分,尤其是对于乳腺的生长和分化。大约三分之二的乳腺癌雌激素受体(ERs)呈阳性,这是乳腺癌细胞生长的一个 predisposing 因素。因此,ERα 是乳腺癌一个有利可图的治疗靶点,在寻找抑制剂方面引起了广泛关注。然而,传统的实验室方法既耗费成本又耗时。因此,非常需要开发替代方法,如定量构效关系(QSAR)模型,以预测 ER 介导的内分泌激动,从而简化未来筛选的优先级。在本研究中,我们汇编并整理了一个包含 1231 种具有 ERα 抑制活性(pIC)化合物的大型非冗余数据集。通过全面的验证测试,可以清楚地观察到,使用子结构计数作为描述符的模型,在两个目标方面表现良好:在模型开发中使用较少的描述符并实现高预测性能( = 0.94, = 0.73,以及 = 0.73)。预计我们提出的 QSAR 模型可能成为识别新型 ERα 抑制剂的有用高通量工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bff7/9079045/23b873b411e2/c7ra10979b-f9.jpg
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2
BDDCS, the Rule of 5 and drugability.生物药剂学分类系统(BDDCS)、五规则与药物可开发性
Adv Drug Deliv Rev. 2016 Jun 1;101:89-98. doi: 10.1016/j.addr.2016.05.007. Epub 2016 May 13.
3
Understanding the Roles of the "Two QSARs".理解“两个定量构效关系”的作用。
用于激素依赖性乳腺癌的雌激素受体α结合剂:基于X射线解析结构支持的电子定量构效关系和分子对接
ACS Omega. 2024 Mar 29;9(14):16759-16774. doi: 10.1021/acsomega.4c00906. eCollection 2024 Apr 9.
4
StackER: a novel SMILES-based stacked approach for the accelerated and efficient discovery of ERα and ERβ antagonists.StackER:一种基于 SMILES 的新型堆叠方法,用于加速和高效发现 ERα 和 ERβ 拮抗剂。
Sci Rep. 2023 Dec 27;13(1):22994. doi: 10.1038/s41598-023-50393-w.
5
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6
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4
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6
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7
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10
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