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基于红外光谱的人工神经网络在肺癌鉴别中的应用。

Artificial neural network in the discrimination of lung cancer based on infrared spectroscopy.

机构信息

Department of Medical Technology, Faculty of Pharmacy, University of Santo Tomas, Manila, Philippines.

Research Center for the Natural and Applied Sciences, University of Santo Tomas, Manila, Philippines.

出版信息

PLoS One. 2022 May 12;17(5):e0268329. doi: 10.1371/journal.pone.0268329. eCollection 2022.

Abstract

Given the increasing prevalence of lung cancer worldwide, an auxiliary diagnostic method is needed alongside the microscopic examination of biopsy samples, which is dependent on the skills and experience of pathologists. Thus, this study aimed to advance lung cancer diagnosis by developing five (5) artificial neural network (NN) models that can discriminate malignant from benign samples based on infrared spectral data of lung tumors (n = 122; 56 malignant, 66 benign). NNs were benchmarked with classical machine learning (CML) models. Stratified 10-fold cross-validation was performed to evaluate the NN models, and the performance metrics-area under the curve (AUC), accuracy (ACC) positive predictive value (PPV), negative predictive value (NPV), specificity rate (SR), and recall rate (RR)-were averaged for comparison. All NNs were able to outperform the CML models, however, support vector machine is relatively comparable to NNs. Among the NNs, CNN performed best with an AUC of 92.28% ± 7.36%, ACC of 98.45% ± 1.72%, PPV of 96.62% ± 2.30%, NPV of 90.50% ± 11.92%, SR of 96.01% ± 3.09%, and RR of 89.21% ± 12.93%. In conclusion, NNs can be potentially used as a computational tool in lung cancer diagnosis based on infrared spectroscopy of lung tissues.

摘要

鉴于全球肺癌的患病率不断上升,除了依赖病理学家的技能和经验进行活检样本的显微镜检查外,还需要一种辅助诊断方法。因此,本研究旨在通过开发五个(5)人工神经网络(NN)模型来推进肺癌诊断,这些模型可以根据肺部肿瘤的红外光谱数据来区分恶性和良性样本(n=122;56 个恶性,66 个良性)。NN 与经典机器学习(CML)模型进行了基准测试。采用分层 10 折交叉验证来评估 NN 模型,平均计算 AUC、ACC、PPV、NPV、SR 和 RR 等性能指标以进行比较。所有的 NN 都能够优于 CML 模型,但是支持向量机与 NN 相对可比。在 NN 中,CNN 的表现最佳,AUC 为 92.28%±7.36%,ACC 为 98.45%±1.72%,PPV 为 96.62%±2.30%,NPV 为 90.50%±11.92%,SR 为 96.01%±3.09%,RR 为 89.21%±12.93%。总之,NN 可以基于肺部组织的红外光谱,作为肺癌诊断的一种计算工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcc2/9098097/717e60e529bc/pone.0268329.g001.jpg

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