Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Laenggassstrasse 122, CH-3012 Bern, Switzerland.
Clinic for Ruminants, Vetsuisse Faculty, University of Bern, Bremgartenstrasse 109a, CH-3012 Bern, Switzerland.
Syst Appl Microbiol. 2022 Jul;45(4):126325. doi: 10.1016/j.syapm.2022.126325. Epub 2022 May 5.
Several strains belonging to the genus Corynebacterium, but not to any described species of the genus were isolated from bovine mastitic milk samples over the past five years in the diagnostic unit of the University of Bern. Six of these strains (18M0132, 17M2518, 18M0913, 19M0083, 20M1046 and 20M1090) that were phenotypically similar were further characterized genotypically. Gram-positive coryneform rods were catalase positive, facultative anaerobe and CAMP-test negative. Whole genome sequencing and subsequent phylogenetic analysis revealed their genome size to be 2.53 Mb and their G + C content to be between 65.4 and 65.5 mol%. Digital DNA-DNA hybridisation (dDDH) showed the highest similarity of only less than 20% with Corynebacterium mastitidis and Corynebacterium frankenforstense, which indicated that the isolates belong to an undescribed Corynebacterium species. This was confirmed by studying the average nucleotide identity (ANI) where the accepted species boundary is around 95% and which ranged between 70.3% and 74.9% with the most closely related species C. mastitidis. We established MALDI-TOF fingerprints of the species, which allows a clear separation from related species and can be used by other laboratories for diagnostic purposes. Based on our analyses we conclude that the selected strains belong to a previously undescribed species and propose the name Corynebacterium uberis sp. nov. The proposed type strain is 18M0132 (=DSM 111922, = CCOS 1972).
在过去五年中,伯尔尼大学诊断部门从牛乳腺炎奶样中分离到几株属于棒状杆菌属但不属于该属任何已描述种的菌株。这 6 株(18M0132、17M2518、18M0913、19M0083、20M1046 和 20M1090)表型相似的菌株进一步进行了遗传特征分析。革兰氏阳性棒状杆菌呈过氧化氢酶阳性,兼性厌氧菌,CAMP 试验阴性。全基因组测序和随后的系统发育分析表明,其基因组大小为 2.53 Mb,G+C 含量在 65.4%至 65.5%之间。数字 DNA-DNA 杂交(dDDH)显示与乳房链球菌和弗兰克氏棒状杆菌的相似度最高只有不到 20%,这表明分离株属于未描述的棒状杆菌种。通过研究平均核苷酸同一性(ANI)证实了这一点,ANI 接受的种间边界约为 95%,而与最密切相关的种乳房链球菌的范围在 70.3%至 74.9%之间。我们建立了该物种的 MALDI-TOF 指纹图谱,这可以使其与相关物种清晰区分,并可被其他实验室用于诊断目的。基于我们的分析,我们得出结论,所选菌株属于以前未描述的种,并提出了棒状杆菌 uberis sp. nov. 的名称。建议的模式株为 18M0132(=DSM 111922,=CCos 1972)。