Busse Hans-Jürgen, Kleinhagauer Tanita, Glaeser Stefanie P, Spergser Joachim, Kämpfer Peter, Rückert Christian
Institut für Mikrobiologie, Veterinärmedizinische Universität, A-1210 Wien, Austria.
Institut für Angewandte Mikrobiologie, Justus-Liebig-Universität Giessen, D-35392 Giessen, Germany.
Int J Syst Evol Microbiol. 2019 Sep;69(9):2928-2935. doi: 10.1099/ijsem.0.003580.
Three Gram-stain-positive, rod-to-coccoid-shaped, catalase-positive and non-motile bacterial strains isolated from the choanae of a Northern bald ibis, designated strains 200CH, W8 and 812CH, respectively, were subjected to comprehensive taxonomic characterization. The three strains were oxidase-negative. The 16S rRNA gene sequence of 200CH showed highest similarities to 410 (96.7 %) followed by DSM 44202, NCTC 7910 and CIP 102968 (each 96.3 %). Strains W8 and 812CH both showed highest 16S rRNA gene sequence similarities to 136/3 (98.0 and 99.9 %, respectively). Comparison of the partial housekeeping gene sequence of showed higher sequence similarities of 812CH to (95.8 %) than W8 (90.9 %) which was also confirmed by corresponding amino acid sequences. In both, gene and corresponding protein sequence strain 200CH showed low sequence similarities to 410(81.6 and 87.4 %, respectively). Strains 812CH and W8 had 76.7 % ANI similarity to each other and 88.2 and 76.4 % to 136/3, respectively. DNA-DNA hybridization values for 812CH and W8 were 22.1 % among the two strains and 35.3 and 21.7 % to 136/3, respectively. These data not only demonstrate that strain W8 is a representative of a novel species, but despite the high 16S rRNA gene sequence similarity to , strain 812CH is also a representative of another novel species. All three strains possessed corynemycolic acids and contained -diaminopimelic acid as the diagnostic diamino acid of the peptidoglycan. The two strains, 200CH and W8, are distinguished from each other and established species phylogenetically and phenotypically. In conclusion, three novel species of the genus are proposed, namely 812CH (=LMG 30627=CCM 8832) 200CH (=LMG 30628=CCM 8831) and W8 (=LMG 30629=CCM 8833), respectively.
从一只北方白鹳的后鼻孔分离出的三株革兰氏阳性、杆状至球状、过氧化氢酶阳性且不运动的细菌菌株,分别命名为200CH、W8和812CH菌株,进行了全面的分类学鉴定。这三株菌株氧化酶阴性。200CH的16S rRNA基因序列与410的相似性最高(96.7%),其次是DSM 44202、NCTC 7910和CIP 102968(均为96.3%)。W8和812CH菌株的16S rRNA基因序列与136/3的相似性最高(分别为98.0%和99.9%)。对部分管家基因序列的比较显示,812CH与136/3的序列相似性(95.8%)高于W8(90.9%),相应的氨基酸序列也证实了这一点。在基因和相应的蛋白质序列方面,200CH菌株与410的序列相似性均较低(分别为81.6%和87.4%)。812CH和W8菌株彼此之间的ANI相似性为76.7%,与136/3的相似性分别为88.2%和76.4%。812CH和W8菌株之间的DNA-DNA杂交值为22.1%,与136/3的分别为35.3%和21.7%。这些数据不仅表明W8菌株是一个新物种的代表,而且尽管812CH菌株与136/3的16S rRNA基因序列相似性很高,但它也是另一个新物种的代表。所有三株菌株都含有棒状菌酸,并且含有二氨基庚二酸作为肽聚糖的诊断性二氨基酸。200CH和W8这两株菌株在系统发育和表型上彼此区分并建立了新物种。总之,提出了该属的三个新物种,分别为812CH(=LMG 30627=CCM 8832)、200CH(=LMG 30628=CCM 8831)和W8(=LMG 30629=CCM 8833)。