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Time-resolved DEER EPR and solid-state NMR afford kinetic and structural elucidation of substrate binding to Ca-ligated calmodulin.时间分辨的 DEER EPR 和固态 NMR 为钙结合钙调蛋白与底物结合的动力学和结构阐明提供了依据。
Proc Natl Acad Sci U S A. 2022 Feb 8;119(6). doi: 10.1073/pnas.2122308119.
2
Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase.毫秒时间分辨固态 NMR 揭示钙调蛋白与肌球蛋白轻链激酶靶肽形成复合物的两阶段分子机制。
J Am Chem Soc. 2020 Dec 16;142(50):21220-21232. doi: 10.1021/jacs.0c11156. Epub 2020 Dec 7.
3
Refolding of Cold-Denatured Barstar Induced by Radio-Frequency Heating: A New Method to Study Protein Folding by Real-Time NMR Spectroscopy.射频加热诱导冷变性巴豆酶的复性:一种通过实时 NMR 光谱法研究蛋白质折叠的新方法。
Angew Chem Int Ed Engl. 2020 Dec 1;59(49):22086-22091. doi: 10.1002/anie.202006945. Epub 2020 Sep 25.
4
Application of millisecond time-resolved solid state NMR to the kinetics and mechanism of melittin self-assembly.毫秒时间分辨固态 NMR 在蜂毒素自组装的动力学和机制中的应用。
Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):16717-16722. doi: 10.1073/pnas.1908006116. Epub 2019 Aug 6.
5
Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell.在核磁共振样品室内快速切换静压研究蛋白质在天然状态下的折叠。
Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4169-E4178. doi: 10.1073/pnas.1803642115. Epub 2018 Apr 16.
6
A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution.一种新型混合全原子/粗粒度模型:在水溶液中对蜂毒肽聚集的应用。
J Chem Theory Comput. 2017 Aug 8;13(8):3881-3897. doi: 10.1021/acs.jctc.7b00071. Epub 2017 Jul 11.
7
Melittin, a major peptide component of bee venom, and its conjugates in cancer therapy.蜂毒肽,一种蜂毒的主要肽成分,及其在癌症治疗中的共轭物。
Cancer Lett. 2017 Aug 28;402:16-31. doi: 10.1016/j.canlet.2017.05.010. Epub 2017 May 20.
8
Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning.采用氦冷却样品和氮气驱动魔角旋转的低温动态核极化
J Magn Reson. 2016 Mar;264:99-106. doi: 10.1016/j.jmr.2016.01.011.
9
NMR chemical shift analysis of the conformational transition between the monomer and tetramer of melittin in an aqueous solution.蜂毒肽在水溶液中单体与四聚体之间构象转变的核磁共振化学位移分析。
Eur Biophys J. 2016 May;45(4):347-54. doi: 10.1007/s00249-015-1102-1. Epub 2015 Dec 11.
10
Ultrafast microfluidic mixer for tracking the early folding kinetics of human telomere G-quadruplex.用于追踪人类端粒 G-四链体早期折叠动力学的超快微流控混合器。
Anal Chem. 2014 May 6;86(9):4333-9. doi: 10.1021/ac500112d. Epub 2014 Apr 22.

毫秒时间分辨固态 NMR 由快速逆温跃变引发。

Millisecond Time-Resolved Solid-State NMR Initiated by Rapid Inverse Temperature Jumps.

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0520, United States.

出版信息

J Am Chem Soc. 2022 Jun 8;144(22):9920-9925. doi: 10.1021/jacs.2c02704. Epub 2022 May 26.

DOI:10.1021/jacs.2c02704
PMID:35617672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9429955/
Abstract

Elucidation of the detailed mechanisms by which biological macromolecules undergo major structural conversions, such as folding, complex formation, and self-assembly, is a central concern of biophysical chemistry that will benefit from new experimental methods. We describe a simple technique for initiating a structural conversion process by a rapid decrease in the temperature of a solution, i.e., a rapid inverse temperature jump. By pumping solutions through copper capillary tubes that are thermally anchored to heated and cooled blocks, solution temperatures can be switched from 95 to 30 °C (or lower) in about 0.8 ms. For time-resolved solid-state nuclear magnetic resonance (ssNMR), solutions can then be frozen rapidly by spraying into cold isopentane after a variable structural evolution time τ. As an initial demonstration, we use this "inverse T-jump" technique to characterize the kinetics and mechanism by which the 26-residue peptide melittin converts from its primarily disordered, monomeric state at 95 °C to its α-helical, tetrameric state at 30 °C. One- and two-dimensional ssNMR spectra of frozen solutions with various values of τ, recorded at 25 K with signal enhancements from dynamic nuclear polarization, show that both helical secondary structure and intermolecular contacts develop on the same time scale of about 6 ms. The dependences on τ of both intraresidue crosspeak patterns and inter-residue crosspeak volumes in two-dimensional spectra can be fit with a unidirectional dimerization model, consistent with dimerization being the rate-limiting step for melittin tetramer formation.

摘要

阐明生物大分子经历主要结构转化(如折叠、复合物形成和自组装)的详细机制是生物物理化学的核心关注点,这将受益于新的实验方法。我们描述了一种通过快速降低溶液温度来引发结构转化过程的简单技术,即快速逆温度跃变。通过将溶液泵入热锚定在加热和冷却块上的铜毛细管中,可以在约 0.8 毫秒内将溶液温度从 95°C 降至 30°C(或更低)。对于时间分辨固态核磁共振(ssNMR),在经过可变的结构演化时间 τ 后,溶液可以通过喷雾到冷异戊烷中快速冷冻。作为初步演示,我们使用这种“逆 T 跳跃”技术来表征蜂肽 26 残基从 95°C 时主要无序的单体状态到 30°C 时的α螺旋四聚体状态的动力学和机制。在 25 K 下用动态核极化增强记录的具有各种 τ 值的冷冻溶液的一维和二维 ssNMR 谱表明,螺旋二级结构和分子间接触都在大约 6 毫秒的相同时间尺度上发展。二维谱中内残基交叉峰图案和间残基交叉峰体积对 τ 的依赖性可以用单向二聚化模型拟合,这与二聚化是蜂肽四聚体形成的限速步骤一致。