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实验证据表明,在一个小蛋白经历微秒尺度折叠之后,会发生毫秒尺度的结构演变。

Experimental Evidence for Millisecond-Timescale Structural Evolution Following the Microsecond-Timescale Folding of a Small Protein.

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0520, USA.

出版信息

Phys Rev Lett. 2024 Jan 26;132(4):048402. doi: 10.1103/PhysRevLett.132.048402.

DOI:10.1103/PhysRevLett.132.048402
PMID:38335342
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11423860/
Abstract

Prior work has shown that small proteins can fold (i.e., convert from unstructured to structured states) within 10  μs. Here we use time-resolved solid state nuclear magnetic resonance (ssNMR) methods to show that full folding of the 35-residue villin headpiece subdomain (HP35) requires a slow annealing process that has not been previously detected. ^{13}C ssNMR spectra of frozen HP35 solutions, acquired with a variable time τ_{e} at 30 °C after rapid cooling from 95 °C and before rapid freezing, show changes on the 3-10 ms timescale, attributable to slow rearrangements of protein sidechains during τ_{e}.

摘要

先前的研究表明,小分子蛋白可以在 10μs 内折叠(即从不稳定状态转变为稳定状态)。在这里,我们使用时间分辨的固态核磁共振(ssNMR)方法表明,35 个残基的绒毛蛋白头部片段(HP35)的完全折叠需要一个以前未检测到的缓慢退火过程。在从 95°C 快速冷却到 30°C 后并在快速冷冻之前,通过在 30°C 下用可变时间 τ_e 获得的冷冻 HP35 溶液的 13C ssNMR 谱在 3-10ms 时间尺度上显示出变化,这归因于 τ_e 期间蛋白质侧链的缓慢重排。

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本文引用的文献

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Millisecond Time-Resolved Solid-State NMR Initiated by Rapid Inverse Temperature Jumps.毫秒时间分辨固态 NMR 由快速逆温跃变引发。
J Am Chem Soc. 2022 Jun 8;144(22):9920-9925. doi: 10.1021/jacs.2c02704. Epub 2022 May 26.
2
Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase.毫秒时间分辨固态 NMR 揭示钙调蛋白与肌球蛋白轻链激酶靶肽形成复合物的两阶段分子机制。
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A novel folding pathway of the villin headpiece subdomain HP35.
低复杂性蛋白质在均相和相分离冷冻溶液中的构象
bioRxiv. 2024 Jul 25:2024.07.25.605144. doi: 10.1101/2024.07.25.605144.
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Protein folding as a jamming transition.蛋白质折叠作为一种阻塞转变。
ArXiv. 2024 May 15:arXiv:2405.09646v1.
一个 villin 头部亚结构域 HP35 的新型折叠途径。
Phys Chem Chem Phys. 2019 Aug 21;21(33):18219-18226. doi: 10.1039/c9cp01703h.
4
Application of millisecond time-resolved solid state NMR to the kinetics and mechanism of melittin self-assembly.毫秒时间分辨固态 NMR 在蜂毒素自组装的动力学和机制中的应用。
Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):16717-16722. doi: 10.1073/pnas.1908006116. Epub 2019 Aug 6.
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Heterogeneity in the Folding of Villin Headpiece Subdomain HP36.Villin 头域亚结构 HP36 的折叠异质性。
J Phys Chem B. 2018 Dec 13;122(49):11640-11648. doi: 10.1021/acs.jpcb.8b07683. Epub 2018 Aug 28.
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Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.肽和蛋白质动力学及低温/DNP 魔角旋转 NMR。
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