DOE (Department of Energy) Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Department of Plant Pathology, University of California, Davis, Davis, CA, USA; Genome Center, University of California, Davis, Davis, CA, USA.
Trends Microbiol. 2022 Nov;30(11):1025-1035. doi: 10.1016/j.tim.2022.05.003. Epub 2022 May 26.
Viruses are key members of Earth's microbiomes, shaping microbial community composition and metabolism. Here, we describe recent advances in 'soil viromics', that is, virus-focused metagenome and metatranscriptome analyses that offer unprecedented windows into the soil virosphere. Given the emerging picture of high soil viral activity, diversity, and dynamics over short spatiotemporal scales, we then outline key eco-evolutionary processes that we hypothesize are the major diversity drivers for soil viruses. We argue that a community effort is needed to establish a 'global soil virosphere atlas' that can be used to address the roles of viruses in soil microbiomes and terrestrial biogeochemical cycles across spatiotemporal scales.
病毒是地球微生物组的重要成员,它们影响微生物群落的组成和代谢。在这里,我们描述了“土壤病毒组学”的最新进展,即专注于病毒的宏基因组和宏转录组分析,为了解土壤病毒圈提供了前所未有的视角。鉴于在短时间和空间尺度上,土壤病毒的活性、多样性和动态呈现出新兴的图景,我们随后概述了我们假设的主要多样性驱动因素的关键生态进化过程。我们认为,需要共同努力建立一个“全球土壤病毒圈图谱”,以便在不同时空尺度上研究病毒在土壤微生物组和陆地生物地球化学循环中的作用。