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DigestPath:用于消化系统病理检测和分割的基准数据集及挑战评测

DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system.

机构信息

Department of Pathology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

SenseTime Research, Shanghai, China.

出版信息

Med Image Anal. 2022 Aug;80:102485. doi: 10.1016/j.media.2022.102485. Epub 2022 May 24.

DOI:10.1016/j.media.2022.102485
PMID:35679692
Abstract

Examination of pathological images is the golden standard for diagnosing and screening many kinds of cancers. Multiple datasets, benchmarks, and challenges have been released in recent years, resulting in significant improvements in computer-aided diagnosis (CAD) of related diseases. However, few existing works focus on the digestive system. We released two well-annotated benchmark datasets and organized challenges for the digestive-system pathological cell detection and tissue segmentation, in conjunction with the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). This paper first introduces the two released datasets, i.e., signet ring cell detection and colonoscopy tissue segmentation, with the descriptions of data collection, annotation, and potential uses. We also report the set-up, evaluation metrics, and top-performing methods and results of two challenge tasks for cell detection and tissue segmentation. In particular, the challenge received 234 effective submissions from 32 participating teams, where top-performing teams developed advancing approaches and tools for the CAD of digestive pathology. To the best of our knowledge, these are the first released publicly available datasets with corresponding challenges for the digestive-system pathological detection and segmentation. The related datasets and results provide new opportunities for the research and application of digestive pathology.

摘要

病理图像检查是诊断和筛查多种癌症的金标准。近年来,已经发布了多个数据集、基准和挑战,这使得相关疾病的计算机辅助诊断(CAD)取得了重大进展。然而,现有的工作很少关注消化系统。我们发布了两个标注良好的基准数据集,并与国际医学影像计算和计算机辅助干预会议(MICCAI)联合组织了消化系统病理细胞检测和组织分割挑战赛。本文首先介绍了两个发布的数据集,即印戒细胞检测和结肠镜组织分割,描述了数据收集、标注以及潜在用途。我们还报告了两个细胞检测和组织分割挑战赛的设置、评估指标以及表现最佳的方法和结果。特别是,该挑战赛收到了来自 32 个参赛团队的 234 份有效提交,其中表现最佳的团队为消化系统病理 CAD 开发了先进的方法和工具。据我们所知,这些是第一个发布的可用于消化系统病理检测和分割的公开数据集及其对应的挑战。相关数据集和结果为消化病理学的研究和应用提供了新的机会。

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