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学习生物分子凝聚物的化学语法。

Learning the chemical grammar of biomolecular condensates.

机构信息

Whitehead Institute for Biomedical Research, Cambridge, MA, USA.

Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.

出版信息

Nat Chem Biol. 2022 Dec;18(12):1298-1306. doi: 10.1038/s41589-022-01046-y. Epub 2022 Jun 27.

Abstract

Biomolecular condensates compartmentalize and regulate assemblies of biomolecules engaged in vital physiological processes in cells. Specific proteins and nucleic acids engaged in shared functions occur in any one kind of condensate, suggesting that these compartments have distinct chemical specificities. Indeed, some small-molecule drugs concentrate in specific condensates due to chemical properties engendered by particular amino acids in the proteins in those condensates. Here we argue that the chemical properties that govern molecular interactions between a small molecule and biomolecules within a condensate can be ascertained for both the small molecule and the biomolecules. We propose that learning this 'chemical grammar', the rules describing the chemical features of small molecules that engender attraction or repulsion by the physicochemical environment of a specific condensate, should enable design of drugs with improved efficacy and reduced toxicity.

摘要

生物分子凝聚物将参与细胞重要生理过程的生物分子组装分隔和调节。参与共享功能的特定蛋白质和核酸存在于任何一种凝聚物中,这表明这些隔室具有不同的化学特异性。事实上,由于凝聚物中蛋白质的特定氨基酸产生的化学性质,一些小分子药物会集中在特定的凝聚物中。在这里,我们认为可以确定小分子和凝聚物内的生物分子之间的分子相互作用的化学性质。我们提出,学习这种“化学语法”,即描述小分子的化学特征的规则,这些规则可以通过特定凝聚物的物理化学环境产生吸引或排斥,应该能够设计出具有更好疗效和降低毒性的药物。

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