Physical Chemistry, ETH Zurich, 8093 Zurich, Switzerland.
Molecular Microbiology and Structural Biochemistry, UMR5086 CNRS/University of Lyon, 7, passage du Vercors, 69367 Lyon, France.
J Am Chem Soc. 2022 Jul 13;144(27):12431-12442. doi: 10.1021/jacs.2c04287. Epub 2022 Jul 1.
The detailed mechanism of ATP hydrolysis in ATP-binding cassette (ABC) transporters is still not fully understood. Here, we employed P solid-state NMR to probe the conformational changes and dynamics during the catalytic cycle by locking the multidrug ABC transporter BmrA in prehydrolytic, transition, and posthydrolytic states, using a combination of mutants and ATP analogues. The P spectra reveal that ATP binds strongly in the prehydrolytic state to both ATP-binding sites as inferred from the analysis of the nonhydrolytic E504A mutant. In the transition state of wild-type BmrA, the symmetry of the dimer is broken and only a single site is tightly bound to ADP:Mg:vanadate, while the second site is more 'open' allowing exchange with the nucleotides in the solvent. In the posthydrolytic state, weak binding, as characterized by chemical exchange with free ADP and by asymmetric P-P two-dimensional (2D) correlation spectra, is observed for both sites. Revisiting the C spectra in light of these findings confirms the conformational nonequivalence of the two nucleotide-binding sites in the transition state. Our results show that following ATP binding, the symmetry of the ATP-binding sites of BmrA is lost in the ATP-hydrolysis step, but is then recovered in the posthydrolytic ADP-bound state.
ATP 结合盒(ABC)转运蛋白中 ATP 水解的详细机制仍不完全清楚。在这里,我们通过使用突变体和 ATP 类似物,将多药 ABC 转运蛋白 BmrA 锁定在预水解、过渡和水解后状态,结合 P 固态 NMR 探测催化循环中的构象变化和动态。P 谱表明,ATP 在预水解状态下强烈结合到两个 ATP 结合位点,这可以从对非水解 E504A 突变体的分析中推断出来。在野生型 BmrA 的过渡状态下,二聚体的对称性被打破,只有一个位点与 ADP:Mg:钒酸盐紧密结合,而第二个位点则更加“开放”,允许与溶剂中的核苷酸交换。在水解后状态下,两个位点都观察到与游离 ADP 的化学交换和不对称 P-P 二维(2D)相关谱的弱结合。根据这些发现重新审视 C 谱,证实了过渡状态下两个核苷酸结合位点的构象不等效。我们的结果表明,在 ATP 结合后,BmrA 的 ATP 结合位点的对称性在 ATP 水解步骤中丢失,但随后在水解后 ADP 结合状态中恢复。