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A Novel Ferroptosis-Related LncRNA Pair Prognostic Signature Predicts Immune Landscapes and Treatment Responses for Gastric Cancer Patients.

作者信息

Li Jiazheng, Xiang Renshen, Song Wei, Wu Jing, Kong Can, Fu Tao

机构信息

Department of Gastrointestinal Surgery II, Renmin Hospital of Wuhan University, Wuhan, China.

出版信息

Front Genet. 2022 Jun 20;13:899419. doi: 10.3389/fgene.2022.899419. eCollection 2022.


DOI:10.3389/fgene.2022.899419
PMID:35795206
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9250987/
Abstract

The construction of ferroptosis-related lncRNA prognostic models in malignancies has been an intense area of research recently. However, most of the studies focused on the exact expression of lncRNAs and had limited application values. Herein, we aim to establish a novel prognostic model for gastric cancer (GC) patients and discuss its correlation with immune landscapes and treatment responses. The present study retrieved transcriptional data of GC patients from the Cancer Genome Atlas (TCGA) database. We identified differentially expressed ferroptosis-related lncRNAs between tumor and normal controls of GC samples. Based on a new method of cyclically single pairing, we constructed a 0 or 1 matrix of ferroptosis-related lncRNA pairs (FRLPs). A risk score signature consisting of 10 FRLPs was established using multi-step Cox regression analysis. Next, we performed a series of systematic analyses to investigate the association of the FRLP model and tumor microenvironment, biological function, and treatment responses. An alternative model to the FRLP risk score signature, the gene set score (GS) model was also constructed, which could represent the former when lncRNA expression was not available. We established a novel prognostic signature of 10 ferroptosis-related lncRNA pairs. High-risk patients in our risk score model were characterized by high infiltration of immune cells, upregulated carcinogenic and stromal activities, and heightened sensitivity to a wide range of anti-tumor drugs, whereas low-risk patients were associated with better responses to methotrexate treatment and elevated immunotherapeutic sensitivity. The practicability of the FRLP risk score model was also validated in two independent microarray datasets downloaded from Gene Expression Omnibus (GEO) using the GS model. Finally, two online dynamic nomograms were built to enhance the clinical utility of the study. In this study, we developed a ferroptosis-related lncRNA pair-based risk score model that did not rely on the exact lncRNA expression level. This novel model might provide insights for the accurate prediction and comprehensive management for GC patients.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/679838f1336d/fgene-13-899419-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/44335eadbfdd/fgene-13-899419-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/64c7a9d81cf0/fgene-13-899419-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/389ec85b3ee5/fgene-13-899419-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/53b1e2678287/fgene-13-899419-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/de0e86625f71/fgene-13-899419-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/f94edb13149a/fgene-13-899419-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/dda099d75cf8/fgene-13-899419-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/3855541a76d3/fgene-13-899419-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/3d9bded3b89a/fgene-13-899419-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/679838f1336d/fgene-13-899419-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/44335eadbfdd/fgene-13-899419-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/64c7a9d81cf0/fgene-13-899419-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/389ec85b3ee5/fgene-13-899419-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/53b1e2678287/fgene-13-899419-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/de0e86625f71/fgene-13-899419-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/f94edb13149a/fgene-13-899419-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/dda099d75cf8/fgene-13-899419-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/3855541a76d3/fgene-13-899419-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/3d9bded3b89a/fgene-13-899419-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f1/9250987/679838f1336d/fgene-13-899419-g010.jpg

相似文献

[1]
A Novel Ferroptosis-Related LncRNA Pair Prognostic Signature Predicts Immune Landscapes and Treatment Responses for Gastric Cancer Patients.

Front Genet. 2022-6-20

[2]
A new ferroptosis-related signature model including messenger RNAs and long non-coding RNAs predicts the prognosis of gastric cancer patients.

J Transl Int Med. 2023-7-5

[3]
A Novel lncRNA Panel Related to Ferroptosis, Tumor Progression, and Microenvironment is a Robust Prognostic Indicator for Glioma Patients.

Front Cell Dev Biol. 2021-12-7

[4]
A Ferroptosis-Related lncRNAs Signature Predicts Prognosis and Therapeutic Response of Gastric Cancer.

Front Cell Dev Biol. 2021-12-2

[5]
A novel ferroptosis-related lncRNA signature for prognosis prediction in gastric cancer.

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[6]
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Front Surg. 2022-7-21

[7]
Construction of a ferroptosis-related five-lncRNA signature for predicting prognosis and immune response in thyroid carcinoma.

Cancer Cell Int. 2022-9-29

[8]
Construction of a Ferroptosis-Related Nine-lncRNA Signature for Predicting Prognosis and Immune Response in Hepatocellular Carcinoma.

Front Immunol. 2021

[9]
Construction on of a Ferroptosis-Related lncRNA-Based Model to Improve the Prognostic Evaluation of Gastric Cancer Patients Based on Bioinformatics.

Front Genet. 2021-8-23

[10]
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引用本文的文献

[1]
Ferroptosis-related LncRNAs in diseases.

BMC Biol. 2025-6-6

[2]
Assessment of prognosis and responsiveness to immunotherapy in colorectal cancer patients based on the level of immune cell infiltration.

Front Immunol. 2025-2-3

[3]
Metabolic reprogramming, autophagy, and ferroptosis: Novel arsenals to overcome immunotherapy resistance in gastrointestinal cancer.

Cancer Med. 2023-11

[4]
Regulation of ncRNAs involved with ferroptosis in various cancers.

Front Genet. 2023-3-29

[5]
LncRNA and its role in gastric cancer immunotherapy.

Front Cell Dev Biol. 2023-2-16

[6]
In Silico Identification and Validation of Cuproptosis-Related LncRNA Signature as a Novel Prognostic Model and Immune Function Analysis in Colon Adenocarcinoma.

Curr Oncol. 2022-9-15

[7]
Construction and validation of a novel prognostic model using the cellular senescence-associated long non-coding RNA in gastric cancer: a biological analysis.

J Gastrointest Oncol. 2022-8

本文引用的文献

[1]
A Survival Prediction for Acute Heart Failure Patients via Web-Based Dynamic Nomogram with Internal Validation: A Prospective Cohort Study.

J Inflamm Res. 2022-3-20

[2]
Establishment and Validation of a Ferroptosis-Related Long Non-Coding RNA Signature for Predicting the Prognosis of Stomach Adenocarcinoma.

Front Genet. 2022-2-15

[3]
A Ferroptosis-Related lncRNAs Signature Predicts Prognosis and Therapeutic Response of Gastric Cancer.

Front Cell Dev Biol. 2021-12-2

[4]
Identification and Validation of a Novel Six-Gene Expression Signature for Predicting Hepatocellular Carcinoma Prognosis.

Front Immunol. 2021

[5]
A novel ferroptosis-related lncRNA signature for prognosis prediction in gastric cancer.

BMC Cancer. 2021-11-13

[6]
Pyroptosis Patterns Characterized by Distinct Tumor Microenvironment Infiltration Landscapes in Gastric Cancer.

Genes (Basel). 2021-9-28

[7]
Establishment of a novel ferroptosis-related lncRNA pair prognostic model in colon adenocarcinoma.

Aging (Albany NY). 2021-10-5

[8]
Stemness-related LncRNA pair signature for predicting therapy response in gastric cancer.

BMC Cancer. 2021-9-29

[9]
Ferroptosis-related lncRNA pairs to predict the clinical outcome and molecular characteristics of pancreatic ductal adenocarcinoma.

Brief Bioinform. 2022-1-17

[10]
SIRT6 silencing overcomes resistance to sorafenib by promoting ferroptosis in gastric cancer.

Biochem Biophys Res Commun. 2021-11-5

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