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从传统民族药理学到现代天然药物发现:方法学讨论及具体实例。

From Traditional Ethnopharmacology to Modern Natural Drug Discovery: A Methodology Discussion and Specific Examples.

机构信息

Department of Biology, School of Sciences and Technology, University of Crete, 71409 Heraklion, Greece.

Botanical Garden, University of Crete, 74100 Rethymnon, Greece.

出版信息

Molecules. 2022 Jun 24;27(13):4060. doi: 10.3390/molecules27134060.

Abstract

Ethnopharmacology, through the description of the beneficial effects of plants, has provided an early framework for the therapeutic use of natural compounds. Natural products, either in their native form or after crude extraction of their active ingredients, have long been used by different populations and explored as invaluable sources for drug design. The transition from traditional ethnopharmacology to drug discovery has followed a straightforward path, assisted by the evolution of isolation and characterization methods, the increase in computational power, and the development of specific chemoinformatic methods. The deriving extensive exploitation of the natural product chemical space has led to the discovery of novel compounds with pharmaceutical properties, although this was not followed by an analogous increase in novel drugs. In this work, we discuss the evolution of ideas and methods, from traditional ethnopharmacology to in silico drug discovery, applied to natural products. We point out that, in the past, the starting point was the plant itself, identified by sustained ethnopharmacological research, with the active compound deriving after extensive analysis and testing. In contrast, in recent years, the active substance has been pinpointed by computational methods (in silico docking and molecular dynamics, network pharmacology), followed by the identification of the plant(s) containing the active ingredient, identified by existing or putative ethnopharmacological information. We further stress the potential pitfalls of recent in silico methods and discuss the absolute need for in vitro and in vivo validation as an absolute requirement. Finally, we present our contribution to natural products' drug discovery by discussing specific examples, applying the whole continuum of this rapidly evolving field. In detail, we report the isolation of novel antiviral compounds, based on natural products active against influenza and SARS-CoV-2 and novel substances active on a specific GPCR, OXER1.

摘要

民族药理学通过描述植物的有益作用,为天然化合物的治疗应用提供了早期框架。天然产物,无论是以其天然形式还是在粗提其活性成分后,都长期被不同的人群使用,并被探索为药物设计的宝贵来源。从传统民族药理学向药物发现的转变遵循了一条直接的道路,得益于分离和特征鉴定方法的发展、计算能力的提高以及特定化学信息学方法的发展。对天然产物化学空间的广泛开发导致了具有药物特性的新型化合物的发现,尽管这并没有带来类似的新型药物的增加。在这项工作中,我们讨论了从传统民族药理学到基于计算机的药物发现的思想和方法的演变,这些方法应用于天然产物。我们指出,在过去,起点是通过持续的民族药理学研究确定的植物本身,活性化合物是在广泛的分析和测试后得出的。相比之下,近年来,通过计算方法(计算机对接和分子动力学、网络药理学)确定了活性物质,然后根据现有的或推测的民族药理学信息确定含有活性成分的植物。我们进一步强调了最近基于计算机的方法的潜在陷阱,并讨论了绝对需要进行体外和体内验证作为绝对要求。最后,我们通过讨论特定的例子,应用这个快速发展领域的整个连续体,展示了我们对天然产物药物发现的贡献。具体来说,我们报告了基于抗流感和 SARS-CoV-2 的天然产物的新型抗病毒化合物的分离以及针对特定 GPCR OXER1 的新型活性物质的分离。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a8e/9268545/045ae0ddbff0/molecules-27-04060-g001.jpg

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