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变构 tRNA 在滑溜溜的 mRNA 上易位时的动力学变化是核糖体自发移框的决定因素。

Altered tRNA dynamics during translocation on slippery mRNA as determinant of spontaneous ribosome frameshifting.

机构信息

Department of Physical Biochemistry, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.

Department of Molecular Structural Biology, Institute for Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany.

出版信息

Nat Commun. 2022 Jul 22;13(1):4231. doi: 10.1038/s41467-022-31852-w.

Abstract

When reading consecutive mRNA codons, ribosomes move by exactly one triplet at a time to synthesize a correct protein. Some mRNA tracks, called slippery sequences, are prone to ribosomal frameshifting, because the same tRNA can read both 0- and -1-frame codon. Using smFRET we show that during EF-G-catalyzed translocation on slippery sequences a fraction of ribosomes spontaneously switches from rapid, accurate translation to a slow, frameshifting-prone translocation mode where the movements of peptidyl- and deacylated tRNA become uncoupled. While deacylated tRNA translocates rapidly, pept-tRNA continues to fluctuate between chimeric and posttranslocation states, which slows down the re-locking of the small ribosomal subunit head domain. After rapid release of deacylated tRNA, pept-tRNA gains unconstrained access to the -1-frame triplet, resulting in slippage followed by recruitment of the -1-frame aa-tRNA into the A site. Our data show how altered choreography of tRNA and ribosome movements reduces the translation fidelity of ribosomes translocating in a slow mode.

摘要

当阅读连续的 mRNA 密码子时,核糖体每次精确移动三个碱基来合成正确的蛋白质。一些称为滑动序列的 mRNA 轨迹容易发生核糖体移码,因为同一个 tRNA 可以读取 0 位和-1 位密码子。我们使用 smFRET 表明,在 EF-G 催化的滑动序列上易位时,一部分核糖体自发地从快速、准确的翻译转变为缓慢、易位倾向的移码模式,在此模式下,肽酰基-tRNA 和去酰化-tRNA 的运动解耦。虽然去酰化 tRNA 快速易位,但肽-tRNA 继续在嵌合和易位后状态之间波动,从而减慢小核糖体亚基头部结构域的重新锁定。去酰化 tRNA 快速释放后,肽-tRNA 不受限制地进入-1 位密码子,导致滑动,随后-1 位 aa-tRNA 招募到 A 位。我们的数据显示了 tRNA 和核糖体运动的改变编排如何降低在缓慢模式下易位的核糖体的翻译保真度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3359/9307594/ad62cbc8d0a2/41467_2022_31852_Fig1_HTML.jpg

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