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甜樱桃()中谷胱甘肽S-转移酶基因家族的鉴定与全基因组综合分析及其表达谱揭示了其在花青素积累中的可能作用。

Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry () and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation.

作者信息

Sabir Irfan Ali, Manzoor Muhammad Aamir, Shah Iftikhar Hussain, Liu Xunju, Jiu Songtao, Wang Jiyuan, Alam Pravej, Abdullah Muhammad, Zhang Caixi

机构信息

Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.

School of Life Sciences, Anhui Agricultural University, Hefei, China.

出版信息

Front Plant Sci. 2022 Jul 12;13:938800. doi: 10.3389/fpls.2022.938800. eCollection 2022.

DOI:10.3389/fpls.2022.938800
PMID:35903236
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9315441/
Abstract

Glutathione S-transferases (GSTs) in plants are multipurpose enzymes that are involved in growth and development and anthocyanins transportation. However, members of the GST gene family were not identified in sweet cherry (). To identify the GST genes in sweet cherry, a genome-wide analysis was conducted. In this study, we identified 67 GST genes in genome and nomenclature according to chromosomal distribution. Phylogenetic tree analysis revealed that genes were classified into seven chief subfamily: TCHQD, Theta, Phi, Zeta, Lambda, DHAR, and Tau. The majority of the genes had a relatively well-maintained exon-intron and motif arrangement within the same group, according to gene structure and motif analyses. Gene structure (introns-exons) and conserved motif analysis revealed that the majority of the genes showed a relatively well-maintained motif and exons-introns configuration within the same group. The chromosomal localization, GO enrichment annotation, subcellular localization, syntenic relationship, Ka/Ks analysis, and molecular characteristics were accomplished using various bioinformatics tools. Mode of gene duplication showed that dispersed duplication might play a key role in the expansion of gene family. Promoter regions of genes contain numerous -regulatory components, which are involved in multiple stress responses, such as abiotic stress and phytohormones responsive factors. Furthermore, the expression profile of sweet cherry showed significant results under LED treatment. Our findings provide the groundwork for future research into induced LED anthocyanin and antioxidants deposition in sweet cherries.

摘要

植物中的谷胱甘肽S-转移酶(GSTs)是多功能酶,参与生长发育和花青素运输。然而,甜樱桃中尚未鉴定出GST基因家族成员。为了鉴定甜樱桃中的GST基因,进行了全基因组分析。在本研究中,我们在基因组中鉴定出67个GST基因,并根据染色体分布进行命名。系统发育树分析表明,这些基因被分为七个主要亚家族:TCHQD、Theta、Phi、Zeta、Lambda、DHAR和Tau。根据基因结构和基序分析,大多数基因在同一组内具有相对保守的外显子-内含子和基序排列。基因结构(内含子-外显子)和保守基序分析表明,大多数基因在同一组内显示出相对保守的基序和外显子-内含子结构。使用各种生物信息学工具完成了染色体定位、GO富集注释、亚细胞定位、共线性关系、Ka/Ks分析和分子特征分析。基因复制模式表明,分散复制可能在基因家族的扩展中起关键作用。基因的启动子区域包含许多调控元件,这些元件参与多种胁迫反应,如非生物胁迫和植物激素响应因子。此外,甜樱桃的表达谱在LED处理下显示出显著结果。我们的研究结果为未来研究LED诱导甜樱桃中花青素和抗氧化剂沉积奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbf4/9315441/83320631ffae/fpls-13-938800-g012.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbf4/9315441/1ef7aeda997d/fpls-13-938800-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbf4/9315441/4395f8be7e8a/fpls-13-938800-g005.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbf4/9315441/1b4504dfd718/fpls-13-938800-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbf4/9315441/282d113d9106/fpls-13-938800-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbf4/9315441/32e543451b0b/fpls-13-938800-g010.jpg
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