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基于Transformer和卷积的发展中国家骨肉瘤MRI图像智能辅助诊断系统

Intelligent Assistant Diagnosis System of Osteosarcoma MRI Image Based on Transformer and Convolution in Developing Countries.

作者信息

Ling Ziqiang, Yang Shun, Gou Fangfang, Dai Zhehao, Wu Jia

出版信息

IEEE J Biomed Health Inform. 2022 Nov;26(11):5563-5574. doi: 10.1109/JBHI.2022.3196043. Epub 2022 Nov 10.

Abstract

Osteosarcoma is a malignant bone tumor commonly found in adolescents or children, with high incidence and poor prognosis. Magnetic resonance imaging (MRI), which is the more common diagnostic method for osteosarcoma, has a very large number of output images with sparse valid data and may not be easily observed due to brightness and contrast problems, which in turn makes manual diagnosis of osteosarcoma MRI images difficult and increases the rate of misdiagnosis. Current image segmentation models for osteosarcoma mostly focus on convolution, whose segmentation performance is limited due to the neglect of global features. In this paper, we propose an intelligent assisted diagnosis system for osteosarcoma, which can reduce the burden of doctors in diagnosing osteosarcoma from three aspects. First, we construct a classification-image enhancement module consisting of resnet18 and DeepUPE to remove redundant images and improve image clarity, which can facilitate doctors' observation. Then, we experimentally compare the performance of serial, parallel, and hybrid fusion transformer and convolution, and propose a Double U-shaped visual transformer with convolution (DUconViT) for automatic segmentation of osteosarcoma to assist doctors' diagnosis. This experiment utilizes more than 80,000 osteosarcoma MRI images from three hospitals in China. The results show that DUconViT can better segment osteosarcoma with DSC 2.6% and 1.8% higher than Unet and Unet++, respectively. Finally, we propose the pixel point quantification method to calculate the area of osteosarcoma, which provides more reference basis for doctors' diagnosis.

摘要

骨肉瘤是一种常见于青少年或儿童的恶性骨肿瘤,发病率高且预后较差。磁共振成像(MRI)是骨肉瘤更常用的诊断方法,其输出图像数量众多但有效数据稀疏,并且由于亮度和对比度问题可能不易观察,这反过来使得骨肉瘤MRI图像的人工诊断困难,并增加了误诊率。当前用于骨肉瘤的图像分割模型大多专注于卷积,由于忽略全局特征,其分割性能有限。在本文中,我们提出了一种骨肉瘤智能辅助诊断系统,该系统可以从三个方面减轻医生诊断骨肉瘤的负担。首先,我们构建了一个由resnet18和DeepUPE组成的分类图像增强模块,以去除冗余图像并提高图像清晰度,这有助于医生观察。然后,我们通过实验比较了串行、并行和混合融合变压器与卷积的性能,并提出了一种带卷积的双U形视觉变压器(DUconViT)用于骨肉瘤的自动分割以辅助医生诊断。本实验使用了来自中国三家医院的80000多张骨肉瘤MRI图像。结果表明,DUconViT能更好地分割骨肉瘤,其DSC分别比Unet和Unet++高2.6%和1.8%。最后,我们提出了像素点量化方法来计算骨肉瘤的面积,为医生的诊断提供了更多参考依据。

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