Ellis Jonathan M, Campbell Meghan E, Kumar Prasanth, Geunes Eric P, Bingman Craig A, Buller Andrew R
Department of Chemistry, University of Wisconsin-Madison; Madison, Wisconsin, United States.
Department of Biochemistry, University of Wisconsin-Madison; Madison, Wisconsin, United States.
Nat Catal. 2022 Feb;5(2):136-143. doi: 10.1038/s41929-022-00743-0. Epub 2022 Feb 21.
Enzymes are renowned for their catalytic efficiency and selectivity. Despite the wealth of carbon-carbon bond forming transformations in traditional organic chemistry and nature, relatively few C-C bond forming enzymes have found their way into the biocatalysis toolbox. Here we show that the enzyme UstD performs a highly selective decarboxylative aldol addition with diverse aldehyde substrates to make non-standard, γ-hydroxy amino acids. We increased the activity of UstD through three rounds of classic directed evolution and an additional round of computationally-guided engineering. The enzyme that emerged, UstD, is efficient in a whole-cell biocatalysis format. The products are highly desirable, functionally rich bioactive γ-hydroxy amino acids that we demonstrate can be prepared stereoselectively on gram-scale. The X-ray crystal structure of UstD at 2.25 Å reveals the active site and provides a foundation for probing the mechanism of UstD.
酶以其催化效率和选择性而闻名。尽管传统有机化学和自然界中存在大量形成碳-碳键的转化反应,但相对较少的碳-碳键形成酶进入了生物催化工具箱。在此,我们展示了酶UstD与多种醛底物进行高度选择性的脱羧醛醇加成反应,以生成非标准的γ-羟基氨基酸。我们通过三轮经典的定向进化和一轮额外的计算指导工程提高了UstD的活性。进化得到的酶UstD在全细胞生物催化形式中效率很高。产物是非常理想的、功能丰富的生物活性γ-羟基氨基酸,我们证明可以在克级规模上立体选择性地制备这些产物。UstD在2.25 Å分辨率下的X射线晶体结构揭示了活性位点,并为探究UstD的作用机制提供了基础。