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亚基间偶联使还原羧化酶能够快速固定一氧化碳。

Intersubunit Coupling Enables Fast CO-Fixation by Reductive Carboxylases.

作者信息

DeMirci Hasan, Rao Yashas, Stoffel Gabriele M, Vögeli Bastian, Schell Kristina, Gomez Aharon, Batyuk Alexander, Gati Cornelius, Sierra Raymond G, Hunter Mark S, Dao E Han, Ciftci Halil I, Hayes Brandon, Poitevin Fredric, Li Po-Nan, Kaur Manat, Tono Kensuke, Saez David Adrian, Deutsch Samuel, Yoshikuni Yasuo, Grubmüller Helmut, Erb Tobias J, Vöhringer-Martinez Esteban, Wakatsuki Soichi

机构信息

Biosciences Division, SLAC National Accelerator Laboratory Menlo Park, California 94025, United States.

PULSE Institute, SLAC National Accelerator Laboratory Menlo Park, California 94025, United States.

出版信息

ACS Cent Sci. 2022 Aug 24;8(8):1091-1101. doi: 10.1021/acscentsci.2c00057. Epub 2022 Apr 25.

DOI:10.1021/acscentsci.2c00057
PMID:36032767
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9413435/
Abstract

Enoyl-CoA carboxylases/reductases (ECRs) are some of the most efficient CO-fixing enzymes described to date. However, the molecular mechanisms underlying the extraordinary catalytic activity of ECRs on the level of the protein assembly remain elusive. Here we used a combination of ambient-temperature X-ray free electron laser (XFEL) and cryogenic synchrotron experiments to study the structural organization of the ECR from . The ECR is a homotetramer that differentiates into a pair of dimers of open- and closed-form subunits in the catalytically active state. Using molecular dynamics simulations and structure-based mutagenesis, we show that catalysis is synchronized in the ECR across the pair of dimers. This conformational coupling of catalytic domains is conferred by individual amino acids to achieve high CO-fixation rates. Our results provide unprecedented insights into the dynamic organization and synchronized inter- and intrasubunit communications of this remarkably efficient CO-fixing enzyme during catalysis.

摘要

烯酰辅酶A羧化酶/还原酶(ECRs)是迄今为止所描述的一些最有效的一氧化碳固定酶。然而,ECRs在蛋白质组装水平上非凡催化活性背后的分子机制仍然难以捉摸。在这里,我们结合使用常温X射线自由电子激光(XFEL)和低温同步加速器实验来研究来自[具体来源未给出]的ECR的结构组织。该ECR是一种同四聚体,在催化活性状态下分化为一对由开放形式和封闭形式亚基组成的二聚体。通过分子动力学模拟和基于结构的诱变,我们表明在该ECR中,催化作用在这对二聚体之间是同步的。催化结构域的这种构象偶联是由单个氨基酸赋予的,以实现高一氧化碳固定率。我们的结果为这种极其高效的一氧化碳固定酶在催化过程中的动态组织以及亚基间和亚基内同步通信提供了前所未有的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/6cb47abdd86c/oc2c00057_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/8f0b1c60269c/oc2c00057_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/4728175c1c31/oc2c00057_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/1803f0125b6b/oc2c00057_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/e9ef7eb9f73f/oc2c00057_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/6cb47abdd86c/oc2c00057_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/8f0b1c60269c/oc2c00057_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/4728175c1c31/oc2c00057_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/1803f0125b6b/oc2c00057_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/e9ef7eb9f73f/oc2c00057_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93f6/9413435/6cb47abdd86c/oc2c00057_0005.jpg

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