从废弃垃圾填埋场的塑料污染土壤中分离出的涅梅根帕内尔产碱菌NGK35的基因组草图序列
Draft Genome Sequence of Paenalcaligenes niemegkensis NGK35, Isolated from Plastic-Polluted Soil of an Abandoned Landfill.
作者信息
Bartholomäus Alexander, Mitzscherling Julia, Lipus Daniel, MacLean Joana, Wagner Dirk
机构信息
GFZ German Research Centre for Geosciences, Section Geomicrobiology, Potsdam, Germany.
University of Potsdam, Institute of Geoscience, Potsdam, Germany.
出版信息
Microbiol Resour Announc. 2022 Oct 20;11(10):e0067122. doi: 10.1128/mra.00671-22. Epub 2022 Aug 31.
Abstract
The Gram-negative bacterium Paenalcaligenes niemegkensis NGK35 was isolated from plastic debris in an abandoned landfill. It has the ability to grow on polyethylene and hexadecane as the sole carbon sources. Here, we report the corresponding draft genome, which contains 3.66 Mbp and is characterized by a G+C content of 52.1%.
摘要
革兰氏阴性菌涅梅根类产碱菌NGK35是从一个废弃垃圾填埋场的塑料碎片中分离出来的。它能够以聚乙烯和十六烷作为唯一碳源生长。在此，我们报告了相应的基因组草图，其包含366万个碱基对，G+C含量为52.1%。
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本文引用的文献
1
sp. nov., a novel species of the family isolated from plastic waste.新种，从塑料垃圾中分离出的该科一种新物种。
Int J Syst Evol Microbiol. 2022 Apr;71(4). doi: 10.1099/ijsem.0.005333.
2
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
3
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
4
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
5
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.JSpeciesWS：一个基于成对基因组比较进行原核生物物种界定的网络服务器。
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
6
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
7
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8
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
9
Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.人海肠菌属，新属，产碱杆菌科的一个新成员。
Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1537-1542. doi: 10.1099/ijs.0.016576-0. Epub 2009 Aug 14.
10
Basic local alignment search tool.基本局部比对搜索工具
J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2.
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