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对肝胰腺转录组的分析为日本沼虾快速卵巢成熟的分子调控机制提供了新的见解。

Hepatopancreas transcriptome analyses provide new insights into the molecular regulatory mechanism of fast ovary maturation in Macrobrachium nipponense.

机构信息

Key Laboratory of Freshwater Fisheries and Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi, Jiangsu, People's Republic of China.

Wuxi Fisheries College, Nanjing Agricultural University, Wuxi, Jiangsu, People's Republic of China.

出版信息

BMC Genomics. 2022 Aug 31;23(1):625. doi: 10.1186/s12864-022-08851-8.

Abstract

BACKGROUND

Macrobrachium nipponense is an economically and ecologically important freshwater prawn that is widely farmed in China. In contrast to other species of marine shrimp, M. nipponense has a short sexual maturity period, resulting in not only high stocking densities, but also a reduced survival rate and increased risk of hypoxia. Therefore, there is an urgent need to study the molecular mechanisms underlying fast ovary maturation in this species.

RESULTS

Comparative transcriptome analysis was performed using hepatopancreatic tissue from female M. nipponense across five ovarian maturation stages to explore differentially expressed genes and pathways involved in ovarian maturation. In total, 118.01 Gb of data were generated from 15 transcriptomes. Approximately 90.46% of clean reads were mapped from the M. nipponense reference genome. A comprehensive comparative analysis between successive ovarian maturation stages generated 230-5814 differentially expressed genes. Gene Ontology (GO) enrichment was highly concentrated in the "biological process" category in all four comparison groups, and mainly focused on energy synthesis and accumulation, energy decomposition and transport. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment results showed that, among 20 significantly enriched KEGG pathways, nine were involved in the synthesis, degradation, and metabolism of carbohydrates, lipids, and other nutrient intermediates, suggesting that the hepatopancreas has an important role in energy supply during ovarian maturation. Furthermore, the "Insect hormone biosynthesis" pathway was found to have a dominant role in the development of the ovary from immaturity to maturity, supporting the hypothesis that ecdysteroid- and juvenile hormone-signaling pathways have an important role in hepatopancreas regulation of ovarian maturation.

CONCLUSION

Taken together, this study sheds light on the role of the hepatopancreas in the molecular regulation of ovary maturation in M. nipponense. The present study provided new insights for understanding the mechanisms of reproductive regulation in crustaceans.

摘要

背景

日本沼虾是一种经济和生态上重要的淡水虾,在中国广泛养殖。与其他海洋虾类相比,日本沼虾的性成熟周期短,不仅导致养殖密度高,而且存活率降低,缺氧风险增加。因此,迫切需要研究该物种卵巢快速成熟的分子机制。

结果

为了探讨参与卵巢成熟的差异表达基因和途径,我们对五个卵巢成熟阶段的雌性日本沼虾的肝胰腺组织进行了比较转录组分析。从 15 个转录组中共生成了 118.01 Gb 的数据。大约 90.46%的清洁读取被映射到日本沼虾参考基因组上。在连续的卵巢成熟阶段之间进行的全面比较分析产生了 230-5814 个差异表达基因。所有四个比较组的基因本体论 (GO) 富集都高度集中在“生物过程”类别中,主要集中在能量合成和积累、能量分解和运输。京都基因与基因组百科全书 (KEGG) 富集结果表明,在 20 个显著富集的 KEGG 途径中,有 9 个涉及碳水化合物、脂质和其他营养中间产物的合成、降解和代谢,这表明肝胰腺在卵巢成熟过程中对能量供应起着重要作用。此外,还发现“昆虫激素生物合成”途径在卵巢从不成熟到成熟的发育过程中起主导作用,支持了蜕皮激素和保幼激素信号通路在肝胰腺调节卵巢成熟中起重要作用的假说。

结论

综上所述,本研究揭示了肝胰腺在日本沼虾卵巢成熟的分子调控中的作用。本研究为理解甲壳动物生殖调控机制提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e1e/9429573/0d56beb3198e/12864_2022_8851_Fig1_HTML.jpg

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