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动脉自旋标记的脑成像数据结构扩展(ASL-BIDS)。

ASL-BIDS, the brain imaging data structure extension for arterial spin labeling.

机构信息

Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.

Department of Information Engineering, University of Padova, Padova, Italy.

出版信息

Sci Data. 2022 Sep 6;9(1):543. doi: 10.1038/s41597-022-01615-9.

Abstract

Arterial spin labeling (ASL) is a non-invasive MRI technique that allows for quantitative measurement of cerebral perfusion. Incomplete or inaccurate reporting of acquisition parameters complicates quantification, analysis, and sharing of ASL data, particularly for studies across multiple sites, platforms, and ASL methods. There is a strong need for standardization of ASL data storage, including acquisition metadata. Recently, ASL-BIDS, the BIDS extension for ASL, was developed and released in BIDS 1.5.0. This manuscript provides an overview of the development and design choices of this first ASL-BIDS extension, which is mainly aimed at clinical ASL applications. Discussed are the structure of the ASL data, focussing on storage order of the ASL time series and implementation of calibration approaches, unit scaling, ASL-related BIDS fields, and storage of the labeling plane information. Additionally, an overview of ASL-BIDS compatible conversion and ASL analysis software and ASL example datasets in BIDS format is provided. We anticipate that large-scale adoption of ASL-BIDS will improve the reproducibility of ASL research.

摘要

动脉自旋标记(ASL)是一种非侵入性的 MRI 技术,可用于定量测量脑灌注。采集参数的不完整或不准确报告使 ASL 数据的量化、分析和共享变得复杂,特别是在多个站点、平台和 ASL 方法之间的研究中。ASL 数据存储(包括采集元数据)需要标准化,这一点非常重要。最近,ASL-BIDS(ASL 的 BIDS 扩展)已开发并在 BIDS 1.5.0 中发布。本文档概述了这个首个 ASL-BIDS 扩展的开发和设计选择,该扩展主要针对临床 ASL 应用。本文讨论了 ASL 数据的结构,重点介绍了 ASL 时间序列的存储顺序以及校准方法、单位缩放、与 ASL 相关的 BIDS 字段和标记平面信息的存储的实现。此外,还提供了 ASL-BIDS 兼容转换和 ASL 分析软件以及 BIDS 格式的 ASL 示例数据集的概述。我们预计,ASL-BIDS 的大规模采用将提高 ASL 研究的可重复性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9a6/9448788/ea6a2c5d2258/41597_2022_1615_Fig1_HTML.jpg

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