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单晶结构测定中反常色散校正参数的优化

Refinement of anomalous dispersion correction parameters in single-crystal structure determinations.

作者信息

Meurer Florian, Dolomanov Oleg V, Hennig Christoph, Peyerimhoff Norbert, Kleemiss Florian, Puschmann Horst, Bodensteiner Michael

机构信息

Faculty for Chemistry and Pharmacy, University of Regensburg, Universitätsstrasse 31, Regensburg 93053, Germany.

OlexSys Ltd, Chemistry Department, Durham University, Durham DH1 3LE, United Kingdom.

出版信息

IUCrJ. 2022 Jul 20;9(Pt 5):604-609. doi: 10.1107/S2052252522006844. eCollection 2022 Sep 1.

DOI:10.1107/S2052252522006844
PMID:36071807
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9438505/
Abstract

Correcting for anomalous dispersion is part of any refinement of an X-ray dif-fraction crystal structure determination. The procedure takes the inelastic scattering in the diffraction experiment into account. This X-ray absorption effect is specific to each chemical compound and is particularly sensitive to radiation energies in the region of the absorption edges of the elements in the compound. Therefore, the widely used tabulated values for these corrections can only be approximations as they are based on calculations for isolated atoms. Features of the unique spatial and electronic environment that are directly related to the anomalous dispersion are ignored, although these can be observed spectroscopically. This significantly affects the fit between the crystallographic model and the measured intensities when the excitation wavelength in an X-ray diffraction experiment is close to an element's absorption edge. Herein, we report on synchrotron multi-wavelength single-crystal X-ray diffraction, as well as X-ray absorption spectroscopy experiments which we performed on the mol-ecular compound Mo(CO) at energies around the molybdenum K edge. The dispersive (') and absorptive ('') terms of the anomalous dispersion can be refined as independent parameters in the full-matrix least-squares refinement. This procedure has been implemented as a new feature in the well-established software suite. These refined parameters are in good agreement with the independently recorded X-ray absorption spectrum. The resulting crystallographic models show significant improvement compared to those employing tabulated values.

摘要

校正反常色散是X射线衍射晶体结构测定任何精修过程的一部分。该过程考虑了衍射实验中的非弹性散射。这种X射线吸收效应对于每种化合物都是特定的,并且对化合物中元素吸收边区域的辐射能量特别敏感。因此,这些校正广泛使用的表格值只能是近似值,因为它们是基于孤立原子的计算。与反常色散直接相关的独特空间和电子环境的特征被忽略了,尽管这些可以通过光谱观察到。当X射线衍射实验中的激发波长接近元素的吸收边时,这会显著影响晶体学模型与测量强度之间的拟合度。在此,我们报告了对分子化合物Mo(CO)在钼K边附近能量处进行的同步辐射多波长单晶X射线衍射以及X射线吸收光谱实验。反常色散的色散项( ')和吸收项( '')可以在全矩阵最小二乘精修中作为独立参数进行精修。该过程已作为一个新功能在成熟的软件套件中实现。这些精修参数与独立记录的X射线吸收光谱非常吻合。与使用表格值的晶体学模型相比,所得的晶体学模型有显著改进。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/5ca65cb8b9db/m-09-00604-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/12792d890caa/m-09-00604-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/5f378afece52/m-09-00604-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/5ca65cb8b9db/m-09-00604-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/12792d890caa/m-09-00604-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/5f378afece52/m-09-00604-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c8/9438505/5ca65cb8b9db/m-09-00604-fig3.jpg

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