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一种用于肺腺癌的新型成纤维细胞评分模型的开发与验证

Development and validation of a novel fibroblast scoring model for lung adenocarcinoma.

作者信息

Wei Shiyou, Gu Xuyu, Zhang Wentian

机构信息

Department of Anesthesiology, Shanghai Pulmonary Hospital, School of Medicine, Tongji University, Shanghai, China.

School of Medicine, Southeast University, Nanjing, China.

出版信息

Front Oncol. 2022 Aug 22;12:905212. doi: 10.3389/fonc.2022.905212. eCollection 2022.

Abstract

The interaction between cancer-associated fibroblasts (CAFs) and the tumor microenvironment (TME) is a key factor for promoting tumor progression. In lung cancer, the crosstalk between CAFs and malignant and immune cells is expected to provide new directions for the development of immunotherapy. In this study, we have systematically analyzed a single-cell dataset and identified interacting genes between CAFs and other cells. Subsequently, a robust fibroblast-related score (FRS) was developed. Kaplan-Meier (KM) and ROC analyses showed its good predictive power for patient prognoses in the training set comprising of specimens from the cancer genome atlas (TCGA) and in three external validation sets from the Gene Expression Omnibus (GEO). Univariate and multivariate Cox regression analyses suggested that FRS was a significant prognostic factor independent of multiple clinical characteristics. Functional enrichment and ssGSEA analyses indicated that patients with a high FRS developed "cold" tumors with active tumor proliferation and immunosuppression capacities. In contrast, those with a low FRS developed "hot" tumors with active immune function and cell killing abilities. Genomic variation analysis showed that the patients with a high FRS possessed a higher somatic mutation burden and copy number alterations and were more sensitive to chemotherapy; patients with a low FRS were more sensitive to immunotherapy, particularly anti-PD1 therapy. Overall, these findings advance the understanding of CAFs in tumor progression and we generated a reliable FRS-based model to assess patient prognoses and guide clinical decision-making.

摘要

癌症相关成纤维细胞(CAFs)与肿瘤微环境(TME)之间的相互作用是促进肿瘤进展的关键因素。在肺癌中,CAFs与恶性细胞和免疫细胞之间的串扰有望为免疫治疗的发展提供新方向。在本研究中,我们系统地分析了一个单细胞数据集,并确定了CAFs与其他细胞之间的相互作用基因。随后,开发了一种稳健的成纤维细胞相关评分(FRS)。Kaplan-Meier(KM)分析和ROC分析表明,在由癌症基因组图谱(TCGA)样本组成的训练集以及来自基因表达综合数据库(GEO)的三个外部验证集中,它对患者预后具有良好的预测能力。单因素和多因素Cox回归分析表明,FRS是一个独立于多种临床特征的显著预后因素。功能富集分析和单样本基因集富集分析(ssGSEA)表明,FRS高的患者形成具有活跃肿瘤增殖和免疫抑制能力的“冷”肿瘤。相比之下,FRS低的患者形成具有活跃免疫功能和细胞杀伤能力的“热”肿瘤。基因组变异分析表明,FRS高的患者具有更高的体细胞突变负担和拷贝数改变,对化疗更敏感;FRS低的患者对免疫治疗更敏感,尤其是抗PD1治疗。总体而言,这些发现加深了我们对CAFs在肿瘤进展中作用的理解,并且我们生成了一个基于FRS的可靠模型来评估患者预后并指导临床决策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3727/9444064/2d33904451b6/fonc-12-905212-g001.jpg

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