Institute of Molecular Biology and Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.
German Center for Neurodegenerative Diseases (DZNE) within the Helmholtz Association, Berlin, Germany.
PLoS Biol. 2022 Sep 12;20(9):e3001783. doi: 10.1371/journal.pbio.3001783. eCollection 2022 Sep.
Western blotting is a standard laboratory method used to detect proteins and assess their expression levels. Unfortunately, poor western blot image display practices and a lack of detailed methods reporting can limit a reader's ability to evaluate or reproduce western blot results. While several groups have studied the prevalence of image manipulation or provided recommendations for improving western blotting, data on the prevalence of common publication practices are scarce. We systematically examined 551 articles published in the top 25% of journals in neurosciences (n = 151) and cell biology (n = 400) that contained western blot images, focusing on practices that may omit important information. Our data show that most published western blots are cropped and blot source data are not made available to readers in the supplement. Publishing blots with visible molecular weight markers is rare, and many blots additionally lack molecular weight labels. Western blot methods sections often lack information on the amount of protein loaded on the gel, blocking steps, and antibody labeling protocol. Important antibody identifiers like company or supplier, catalog number, or RRID were omitted frequently for primary antibodies and regularly for secondary antibodies. We present detailed descriptions and visual examples to help scientists, peer reviewers, and editors to publish more informative western blot figures and methods. Additional resources include a toolbox to help scientists produce more reproducible western blot data, teaching slides in English and Spanish, and an antibody reporting template.
蛋白质印迹法是一种用于检测蛋白质并评估其表达水平的标准实验室方法。遗憾的是,Western blot 图像显示实践中的不良做法和缺乏详细方法报告可能会限制读者评估或复制 Western blot 结果的能力。尽管有几个小组研究了图像操作的普遍性或提供了改进 Western blot 的建议,但有关常见出版实践的普遍性的数据却很少。我们系统地检查了在神经科学(n=151)和细胞生物学(n=400)领域排名前 25%的期刊中发表的 551 篇包含 Western blot 图像的文章,重点关注可能会遗漏重要信息的做法。我们的数据表明,大多数已发表的 Western blot 图像都经过裁剪,并且读者无法在补充材料中获得原始 blot 数据。出版的 blot 带有可见分子量标记的情况很少见,许多 blot 另外还缺少分子量标签。Western blot 方法部分通常缺少有关加载到凝胶上的蛋白质量、封闭步骤和抗体标记方案的信息。重要的抗体标识符,如公司或供应商、目录编号或 RRID,经常会被省略,尤其是针对一抗,二抗则经常会省略。我们提供了详细的描述和视觉示例,以帮助科学家、同行评审员和编辑发表更具信息量的 Western blot 图像和方法。其他资源包括一个工具箱,可帮助科学家生成更具可重复性的 Western blot 数据、英语和西班牙语教学幻灯片,以及抗体报告模板。