Wang Xiaojing, Zhao Yue, Strohmer Dorothee Franziska, Yang Wenjin, Xia Zhijia, Yu Cong
Department of Neurosurgery, Shanghai Pudong New Area People's Hospital, Shanghai, China.
Department of Neurology, The First Affiliated Hospital of Anhui Medical University, Hefei, China.
Front Genet. 2022 Aug 30;13:983672. doi: 10.3389/fgene.2022.983672. eCollection 2022.
Head and neck squamous cell carcinoma (HNSCC) is the sixth most frequent cancer in humans globally. In addition to smoking and drinking, genetic and epigenetic changes also play a big role in how HNSCC starts and grows. MicroRNAs are short, non-coding RNAs that control cell differentiation and apoptosis by interfering with gene expression. In addition, microRNAs in HNSCC have been shown to affect the clinical behaviors of HNSCC in amazing ways. Moreover, metabolic reprogramming is a key part of cancer and is needed for cancer to turn into a tumor and grow. But it is still not clear what effect microRNAs related to fatty acid metabolism have on the prognosis of HNSCC patients. We downloaded the data of HNSCC patients from the TCGA database and obtained the genes associated with fatty acid metabolism according to the GSEA database. Then, the microRNAs associated with fatty acid metabolism genes were matched. Finally, fatty acid metabolism gene-associated microRNAs for calculating risk scores and then building multifactorial Cox regression models in patients with HNSCC. Heatmap analysis showed that microRNAs involved in fatty acid metabolism were significantly different in HNSCC patients than in healthy controls. A total of 27 microRNAs associated with fatty acid metabolism were screened by univariate Cox analysis ( < 0.05). Using lasso regression, 18 microRNAs substantially linked with the prognosis of HNSCC patients were identified and included in risk scores. The ROC curves demonstrate that risk scores derived from microRNAs involved in fatty acid metabolism can accurately predict the prognosis of HNSCC patients at 1, 3, and 5 years. Moreover, we discovered that 11 microRNAs included in the risk score properly distinguished the prognosis of HNSCC patients. This paper indicated that microRNAs involved with fatty acid metabolism are strongly linked to the prognosis of HNSCC patients. It also indicated that reprogramming of fatty acid metabolism in tumor tissues may play an important role in HNSCC cancer.
头颈部鳞状细胞癌(HNSCC)是全球人类中第六大常见癌症。除吸烟和饮酒外,基因和表观遗传变化在HNSCC的发生和发展过程中也起着重要作用。微小RNA是一类短链非编码RNA,通过干扰基因表达来控制细胞分化和凋亡。此外,HNSCC中的微小RNA已被证明以惊人的方式影响HNSCC的临床行为。而且,代谢重编程是癌症的一个关键部分,是癌症转变为肿瘤并生长所必需的。但与脂肪酸代谢相关的微小RNA对HNSCC患者预后的影响仍不清楚。我们从TCGA数据库下载了HNSCC患者的数据,并根据GSEA数据库获得了与脂肪酸代谢相关的基因。然后,匹配与脂肪酸代谢基因相关的微小RNA。最后,计算脂肪酸代谢基因相关微小RNA的风险评分,然后在HNSCC患者中建立多因素Cox回归模型。热图分析显示,参与脂肪酸代谢的微小RNA在HNSCC患者中与健康对照者有显著差异。通过单因素Cox分析筛选出总共27个与脂肪酸代谢相关的微小RNA(P<0.05)。使用套索回归,确定了18个与HNSCC患者预后密切相关的微小RNA并纳入风险评分。ROC曲线表明,由参与脂肪酸代谢的微小RNA得出的风险评分能够准确预测HNSCC患者1年、3年和5年的预后。此外,我们发现风险评分中包含的11个微小RNA能够很好地区分HNSCC患者的预后。本文表明,与脂肪酸代谢相关的微小RNA与HNSCC患者的预后密切相关。这也表明肿瘤组织中脂肪酸代谢的重编程可能在HNSCC癌症中起重要作用。