N.F. Gamaleya National Research Center of Epidemiology and Microbiology, Ministry of Health of the Russian Federation, Moscow, Russia.
All-Russia Research Institute of Agricultural Biotechnology, Russian Academy of Sciences, Moscow, Russia.
Appl Microbiol Biotechnol. 2022 Oct;106(19-20):6519-6534. doi: 10.1007/s00253-022-12173-w. Epub 2022 Sep 16.
Peptidoglycan-degrading enzymes are a group of proteins intensively studied as novel antibacterials, with some of them having reached pre-clinical and clinical stages of research. Many peptidoglycan-degrading enzymes have modular organization and consist of a catalytic and a cell wall binding domain. This property has been exploited in enzyme engineering efforts, and many new peptidoglycan-degrading enzymes were generated through domain exchange. However, rational combination of domains from different enzymes is still challenging since relative contribution of every domain to the cumulative bacteriolytic activity is not yet clearly understood. In this work, we investigated the influence of ionic strength and pH on the catalytic efficiency and cell binding of peptidoglycan-degrading enzyme lysostaphin and how this influence is reflected in the lysostaphin bacteriolytic activity. Contrary to generally accepted view, lysostaphin domains are not completely independent and their combination within one protein leads to increased bacteriolytic activity with increasing NaCl concentration, despite both catalysis and cell binding being inhibited by NaCl. This effect is likely mediated by changes in conformation of bacterial cell wall peptidoglycan rather than the physical inter-domain interaction. KEY POINTS: • NaCl enhances bacteriolytic activity of lysostaphin but not of its catalytic domain. • Catalytic activity and cell binding of lysostaphin are inhibited by NaCl. • Peptidoglycan conformation likely affects lysostaphin bacteriolytic activity.
肽聚糖降解酶是一组作为新型抗菌药物受到深入研究的蛋白质,其中一些已经进入临床前和临床研究阶段。许多肽聚糖降解酶具有模块化组织,由一个催化结构域和一个细胞壁结合结构域组成。这一特性已被应用于酶工程研究中,通过结构域交换产生了许多新的肽聚糖降解酶。然而,不同酶的结构域的合理组合仍然具有挑战性,因为每个结构域对累积的溶菌活性的相对贡献尚不清楚。在这项工作中,我们研究了离子强度和 pH 值对肽聚糖降解酶溶菌酶的催化效率和细胞结合的影响,以及这种影响如何反映在溶菌酶的溶菌活性中。与普遍接受的观点相反,溶菌酶的结构域并不是完全独立的,它们在一个蛋白质中的组合导致溶菌活性随着 NaCl 浓度的增加而增加,尽管 NaCl 抑制了催化和细胞结合。这种效应可能是由细菌细胞壁肽聚糖构象的变化介导的,而不是结构域之间的物理相互作用。关键点:•NaCl 增强了溶菌酶的溶菌活性,但不能增强其催化结构域的活性。•NaCl 抑制溶菌酶的催化活性和细胞结合。•肽聚糖构象可能影响溶菌酶的溶菌活性。