Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA.
Mol Ecol. 2022 Dec;31(24):6457-6472. doi: 10.1111/mec.16715. Epub 2022 Oct 21.
Crop wild relatives (CWRs) have the capacity to contribute novel traits to agriculture. Given climate change, these contributions may be especially vital for the persistence of perennial crops, because perennials are often clonally propagated and consequently do not evolve rapidly. By studying the landscape genomics of samples from five Vitis CWRs (V. arizonica, V. mustangensis, V. riparia, V. berlandieri and V. girdiana) in the context of projected climate change, we addressed two goals. The first was to assess the relative potential of different CWR accessions to persist in the face of climate change. By integrating species distribution models with adaptive genetic variation, additional genetic features such as genomic load and a phenotype (resistance to Pierce's Disease), we predicted that accessions from one species (V. mustangensis) are particularly well-suited to persist in future climates. The second goal was to identify which CWR accessions may contribute to bioclimatic adaptation for grapevine (V. vinifera) cultivation. To do so, we evaluated whether CWR accessions have the allelic capacity to persist if moved to locations where grapevines are cultivated in the United States. We identified six candidates from V. mustangensis and hypothesized that they may prove useful for contributing alleles that can mitigate climate impacts on viticulture. By identifying candidate germplasm, this study takes a conceptual step toward assessing the genomic and bioclimatic characteristics of CWRs.
野生近缘作物(CWR)具有为农业贡献新特性的能力。考虑到气候变化,这些贡献对于多年生作物的持续存在可能尤为重要,因为多年生作物通常通过克隆繁殖,因此进化速度不快。通过研究五个葡萄野生近缘种(V. arizonica、V. mustangensis、V. riparia、V. berlandieri 和 V. girdiana)在预测气候变化背景下的景观基因组学,我们实现了两个目标。第一个目标是评估不同野生近缘种在面对气候变化时持续存在的相对潜力。通过将物种分布模型与适应性遗传变异相结合,以及其他遗传特征(如基因组负荷和表型(抗皮尔斯病)),我们预测一个物种(V. mustangensis)的个体特别适合在未来的气候中生存。第二个目标是确定哪些野生近缘种可能有助于葡萄(V. vinifera)栽培的生物气候适应。为此,我们评估了野生近缘种的个体如果被转移到美国葡萄栽培地,是否具有生存的等位基因能力。我们从 V. mustangensis 中鉴定出六个候选者,并假设它们可能有助于为减轻气候变化对葡萄栽培的影响提供有用的等位基因。通过鉴定候选种质资源,本研究在评估野生近缘种的基因组和生物气候特征方面迈出了概念性的一步。