Suppr超能文献

使用全基因组测序对从韩国孕妇中采集的 B 组分离株的分子特征进行比较分析。

Comparative Analysis of the Molecular Characteristics of Group B Isolates Collected from Pregnant Korean Women Using Whole-genome Sequencing.

机构信息

Department of Laboratory Medicine, Hanyang University College of Medicine, Seoul, Korea.

Seoul Clinical Laboratories, Yongin, Korea.

出版信息

Ann Lab Med. 2023 Mar 1;43(2):180-186. doi: 10.3343/alm.2023.43.2.180. Epub 2022 Oct 25.

Abstract

BACKGROUND

The incidence of early- and late-onset sepsis and meningitis in neonates due to maternal rectovaginal group B (GBS) colonization may differ with serotype distribution and clonal complex (CC). CC17 strains are associated with hypervirulence and poor disease outcomes. GBS serotypes are distinguished based on the polysaccharide capsule, the most important virulence factor. We determined the sequence type distribution of GBS isolates from pregnant women in Korea and validated whole-genome sequencing (WGS)-based prediction of antimicrobial susceptibility and capsular serotypes in GBS isolates.

METHODS

Seventy-five GBS isolates collected from pregnant Korean women visiting Wonju Severance Christian Hospital, Wonju, Korea between 2017 and 2019 were subjected to WGS using the NovaSeq 6000 system (Illumina, San Diego, CA, USA). Multilocus sequence types, serotypes, antimicrobial resistance genes, and hemolysin operon mutations were determined by WGS, and the latter three were compared with the results of conventional phenotypic methods.

RESULTS

The predominant lineage was CC1 (37.3%), followed by CC19 (32.0%), CC12 (17.3%), and CC17 (4.0%). All isolates were cps typeable (100%, (75/75), and 89.3% of cps genotypes (67/75) were concordant with serotypes obtained using latex agglutination. The cps genotypes of the 75 isolates were serotypes III (24.0%), V (22.7%), and VIII (17.3%). All isolates harboring intact and were non-susceptible to erythromycin and tetracycline, respectively. Three non-hemolytic strains had 1-bp frameshift insertions in .

CONCLUSIONS

The low prevalence of CC17 GBS colonization may explain the low frequency of neonatal GBS infections. WGS is a useful tool for simultaneous genotyping and antimicrobial resistance determination.

摘要

背景

由于母体直肠阴道群 B(GBS)定植,新生儿早发性和迟发性败血症和脑膜炎的发病率可能因血清型分布和克隆复合物(CC)而异。CC17 菌株与高毒力和不良疾病结局相关。GBS 血清型根据多糖荚膜区分,荚膜是最重要的毒力因子。我们确定了韩国孕妇中 GBS 分离株的序列型分布,并验证了基于全基因组测序(WGS)的 GBS 分离株对抗菌药物敏感性和荚膜血清型的预测。

方法

对 2017 年至 2019 年期间在韩国沃努军塞弗伦斯基督教医院就诊的 75 例韩国孕妇的 GBS 分离株进行 WGS 检测,使用 NovaSeq 6000 系统(Illumina,圣地亚哥,CA,USA)。通过 WGS 确定多位点序列型、血清型、抗菌药物耐药基因和溶血素操纵子突变,并将后三者与传统表型方法的结果进行比较。

结果

主要谱系是 CC1(37.3%),其次是 CC19(32.0%)、CC12(17.3%)和 CC17(4.0%)。所有分离株均可进行 cps 型鉴定(100%,(75/75),并且 89.3%的 cps 基因型(67/75)与使用乳胶凝集法获得的血清型一致。75 株分离株的 cps 基因型为血清型 III(24.0%)、V(22.7%)和 VIII(17.3%)。所有携带完整 和 的分离株分别对红霉素和四环素不敏感。3 株非溶血株在 中存在 1 个碱基的移码插入。

结论

CC17 GBS 定植率低可能解释了新生儿 GBS 感染频率较低的原因。WGS 是一种用于同时进行基因分型和抗菌药物敏感性测定的有用工具。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验