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基于自动度量图神经网络的慢性阻塞性肺疾病(COPD)阶段分类的肺影像组学特征选择

Lung Radiomics Features Selection for COPD Stage Classification Based on Auto-Metric Graph Neural Network.

作者信息

Yang Yingjian, Wang Shicong, Zeng Nanrong, Duan Wenxin, Chen Ziran, Liu Yang, Li Wei, Guo Yingwei, Chen Huai, Li Xian, Chen Rongchang, Kang Yan

机构信息

College of Medicine and Biological Information Engineering, Northeastern University, Shenyang 110169, China.

College of Health Science and Environmental Engineering, Shenzhen Technology University, Shenzhen 518118, China.

出版信息

Diagnostics (Basel). 2022 Sep 20;12(10):2274. doi: 10.3390/diagnostics12102274.

DOI:10.3390/diagnostics12102274
PMID:36291964
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9600898/
Abstract

Chronic obstructive pulmonary disease (COPD) is a preventable, treatable, progressive chronic disease characterized by persistent airflow limitation. Patients with COPD deserve special consideration regarding treatment in this fragile population for preclinical health management. Therefore, this paper proposes a novel lung radiomics combination vector generated by a generalized linear model (GLM) and Lasso algorithm for COPD stage classification based on an auto-metric graph neural network (AMGNN) with a meta-learning strategy. Firstly, the parenchyma images were segmented from chest high-resolution computed tomography (HRCT) images by ResU-Net. Second, lung radiomics features are extracted from the parenchyma images by PyRadiomics. Third, a novel lung radiomics combination vector (3 + 106) is constructed by the GLM and Lasso algorithm for determining the radiomics risk factors (K = 3) and radiomics node features (d = 106). Last, the COPD stage is classified based on the AMGNN. The results show that compared with the convolutional neural networks and machine learning models, the AMGNN based on constructed novel lung radiomics combination vector performs best, achieving an accuracy of 0.943, precision of 0.946, recall of 0.943, F1-score of 0.943, and ACU of 0.984. Furthermore, it is found that our method is effective for COPD stage classification.

摘要

慢性阻塞性肺疾病(COPD)是一种可预防、可治疗的进行性慢性疾病,其特征为持续气流受限。对于这一脆弱人群的临床前健康管理而言,COPD患者在治疗方面值得特别关注。因此,本文基于具有元学习策略的自动度量图神经网络(AMGNN),提出了一种由广义线性模型(GLM)和套索算法生成的用于COPD阶段分类的新型肺影像组学组合向量。首先,通过ResU-Net从胸部高分辨率计算机断层扫描(HRCT)图像中分割出实质图像。其次,利用PyRadiomics从实质图像中提取肺影像组学特征。第三,通过GLM和套索算法构建一种新型肺影像组学组合向量(3 + 106),以确定影像组学风险因素(K = 3)和影像组学节点特征(d = 106)。最后,基于AMGNN对COPD阶段进行分类。结果表明,与卷积神经网络和机器学习模型相比,基于构建的新型肺影像组学组合向量的AMGNN表现最佳,准确率达到0.943,精确率为0.946,召回率为0.943,F1分数为0.943,曲线下面积(ACU)为0.984。此外,研究发现我们的方法对COPD阶段分类是有效的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/7df78d9b0a3f/diagnostics-12-02274-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/ff65b7237aa5/diagnostics-12-02274-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/f69f101a12e0/diagnostics-12-02274-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/d379a2840548/diagnostics-12-02274-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/40d1b7a34471/diagnostics-12-02274-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/bbe216b22789/diagnostics-12-02274-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/4aa601714ee9/diagnostics-12-02274-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/7df78d9b0a3f/diagnostics-12-02274-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/ff65b7237aa5/diagnostics-12-02274-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/f69f101a12e0/diagnostics-12-02274-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/d379a2840548/diagnostics-12-02274-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/40d1b7a34471/diagnostics-12-02274-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/bbe216b22789/diagnostics-12-02274-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/4aa601714ee9/diagnostics-12-02274-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9600898/7df78d9b0a3f/diagnostics-12-02274-g007.jpg

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