Onoja Anyebe Bernard, Omatola Arome Cornelius, Maiga Mamoudou, Gadzama Ishaya Samuel
Department of Virology, College of Medicine, University of Ibadan, Ibadan 200284, Nigeria.
Department of Microbiology, Kogi State University, Anyigba 272102, Nigeria.
Pathogens. 2022 Oct 8;11(10):1162. doi: 10.3390/pathogens11101162.
Different ecological zones favor the breeding of species. The molecular epidemiology of dengue virus (DENV), yellow fever virus (YFV), and Chikungunya virus (CHIKV) was determined from outbreaks and surveillance activities in Nigeria. Twenty-eight DENV, twenty-five YFV, and two CHIKV sequences from Nigeria were retrieved from GenBank. Genotyping was performed with a genome detective typing tool. The evolutionary comparison was performed by the Maximum Likelihood method on MEGA. Chi-square was used to compare the association between the proportions of viral infections at different times. Six DENV-1 were detected in 1964, 1965, 1978, 2007, and 2018. Nineteen DENV-2 strains were reported, four belonging to sylvatic VI, one belonging to cosmopolitan II, and twelve to Asian I genotype V. DENV-2 genotype VI was detected in 1966, and genotypes II and V in 2019. All three DENV-3 were detected in 2018, while only one DENV-4 was identified in 2019. YFV was reported in 1946 and then in the 60s, 70s, 80s, 90s, 2018, and 2019 with reports to date. CHIKV is still circulating following its identification in 1964 and 1965. Recurrent episodes of dengue, Chikungunya, and yellow fever continue unabated. Vector control initiatives and immunization should be greatly sustained.
不同的生态区域有利于物种繁殖。通过尼日利亚的疫情爆发和监测活动确定了登革热病毒(DENV)、黄热病病毒(YFV)和基孔肯雅病毒(CHIKV)的分子流行病学。从GenBank中检索到来自尼日利亚的28条DENV序列、25条YFV序列和2条CHIKV序列。使用基因组检测分型工具进行基因分型。通过MEGA上的最大似然法进行进化比较。使用卡方检验比较不同时间病毒感染比例之间的关联。在1964年、1965年、1978年、2007年和2018年检测到6株DENV-1。报告了19株DENV-2毒株,其中4株属于丛林型VI,1株属于泛在型II,12株属于亚洲I基因型V。1966年检测到DENV-2基因型VI,2019年检测到基因型II和V。所有3株DENV-3均在2018年检测到,而2019年仅鉴定出1株DENV-4。YFV于1946年被报告,随后在60年代、70年代、80年代、90年代、2018年和2019年都有报告。CHIKV自1964年和1965年被鉴定以来仍在传播。登革热、基孔肯雅热和黄热病的反复流行仍未减弱。应大力持续开展病媒控制举措和免疫接种工作。